Information for 3-CCACTCATGT (Motif 3)

A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A C G T A C T G C G T A A C T G C G A T C T A G A C T G
p-value:1e-7
log p-value:-1.662e+01
Information Content per bp:1.934
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif13.04%
Number of Background Sequences with motif191.2
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets513.5 +/- 268.9bp
Average Position of motif in Background448.0 +/- 327.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CCACTCATGT
AGCCACTCAAG-
 A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T

NKX2-2/MA1645.1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCACTCATGT-
TAACCACTCAAGAA
 A C G T A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T A C G T
G A C T G C T A C G T A T G A C G A T C G C T A G T A C G C A T A T G C G T C A T C G A T C A G G C T A G C T A

MSANTD3/MA1523.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACTCATGT
GTACACTCAC--
 A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
A T C G A C G T T G C A G A T C C G T A G A T C G C A T G A T C G T C A G T A C A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCACTCATGT
AASCACTCAA--
 A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T

MXI1/MA1108.2/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCACTCATGT---
---NNCATGTGNN
 A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G T G A C G A T C C T G A A G C T T C A G G A C T C T A G A G C T G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACTCATGT
RSCACTYRAG-
 A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T

NKX2-5/MA0063.2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CCACTCATGT
ACCACTCAAAA
 A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
T C G A T G A C G A T C C T G A G A T C G C A T G A T C C G T A G C T A T C G A G C T A

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCACTCATGT----
ACATTCATGACACG
 A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

USF2/MA0526.3/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCACTCATGT-----
-TGGTCATGTGACCT
 A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T A G T C A G A G C T A T G C G T C A A G C T T C A G C A G T A T C G T C G A A G T C G A T C G C A T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CCACTCATGT
MRSCACTYAA--
 A C G T A C G T A G T C A G T C C G T A A G T C A C G T A G T C C G T A A C G T A C T G A C G T
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T