Information for 8-TCGTTACTGC (Motif 8)

A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
Reverse Opposite:
A C T G A T G C C G T A A C T G A G C T G T C A C G T A A G T C T A C G C G T A
p-value:1e-6
log p-value:-1.450e+01
Information Content per bp:1.882
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif10.64%
Number of Background Sequences with motif146.5
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets285.2 +/- 121.1bp
Average Position of motif in Background492.7 +/- 302.8bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TCGTTACTGC
-CGTTGCTAT
 A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
A C G T A T G C A T C G A G C T A G C T C T A G A T G C A G C T C T G A G A C T

HOXA9/MA0594.2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TCGTTACTGC
GTCGTAAACG-
 A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G A C G T

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TCGTTACTGC
NHGTCGTGAYDN-
 A C G T A C G T A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
C T A G G T C A C A T G A C G T A T G C T C A G C A G T A C T G G T C A A G T C C G A T A G T C A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TCGTTACTGC
TACCCTAGTTACCGA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.61
Offset:-9
Orientation:forward strand
Alignment:---------TCGTTACTGC----
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTACTGC----
NCCGTTGCTANGNGN
 A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCGTTACTGC
ACTTTCGTTTCT--
 A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T

HMBOX1/MA0895.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TCGTTACTGC
ACTAGTTAAC--
 A C G T A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C A C G T A C G T

HOXA4/MA1496.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TCGTTACTGC
GTCATTAG---
 A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
T C A G A G C T T G A C C T G A A C G T A G C T T C G A T C A G A C G T A C G T A C G T

FOXD1/MA0031.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTACTGC
ATGTTTAC---
 A C G T A C G T A T G C A C T G A C G T A C G T C T G A A G T C A C G T A T C G A G T C
G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T A C G T