Information for 3-GGAGCACAGA (Motif 3)

C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A
Reverse Opposite:
G C A T A G T C A C G T A T C G C G A T T C A G A G T C A C G T A T G C A G T C
p-value:1e-8
log p-value:-1.872e+01
Information Content per bp:1.829
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif34.04%
Number of Background Sequences with motif2743.2
Percentage of Background Sequences with motif6.01%
Average Position of motif in Targets501.7 +/- 284.0bp
Average Position of motif in Background519.3 +/- 335.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACAGA
GGGAGGACNG-
 A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCACAGA---
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGAGCACAGA-----
CGAAGCACACAAAATA
 A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCACAGA
CGGAGC-----
 A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGAGCACAGA-----
AGCGGCACACACGCAA
 A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGAGCACAGA---
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGAGCACAGA
----CACAGN
 C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GGAGCACAGA
CCAGGAACAG-
 A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGAGCACAGA-----
---RHHCAGAGAGGB
 C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G G T C A G C T A A G T C C G T A A T C G T C G A T C A G C G T A A C T G A C T G A C T G

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGAGCACAGA---
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T C T A G T A C G T G C A A C T G A G T C C G T A A T G C C G T A T C A G C G T A A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T