Information for 12-TATGTATATG (Motif 12)

A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G
Reverse Opposite:
A G T C C G T A A C G T C G T A A C G T C T G A A G T C C G T A A C G T C G T A
p-value:1e-3
log p-value:-8.023e+00
Information Content per bp:1.935
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif8.51%
Number of Background Sequences with motif315.8
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets214.4 +/- 157.7bp
Average Position of motif in Background468.1 +/- 280.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:TATGTATATG-
-ATGMATATDC
 A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-TATGTATATG----
AYATGYATATGCATR
 A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T A C G T A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

POU5F1B/MA0792.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TATGTATATG
TATGCAAAT-
 A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T

POU3F4/MA0789.1/Jaspar

Match Rank:4
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TATGTATATG
TATGCAAAT-
 A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TATGTATATG-
-ATGAATATTC
 A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T
A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----TATGTATATG--
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TATGTATATG-
TTATGCAAATTA
 A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TATGTATATG
AATATGCAAATT
 A C G T A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G
G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:9
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TATGTATATG--
ATATGCAAATNNN
 A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T A C G T
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---TATGTATATG---
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A G C T C G T A A C G T C G T A A C G T C T A G A C G T A C G T A C G T
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A