Information for 1-CAAGTTTMGC (Motif 1)

G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
Reverse Opposite:
C T A G A T G C A C T G C G T A C T G A C G T A G T A C A C G T C G A T A C T G
p-value:1e-9
log p-value:-2.241e+01
Information Content per bp:1.727
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif29.79%
Number of Background Sequences with motif1479.5
Percentage of Background Sequences with motif3.24%
Average Position of motif in Targets573.9 +/- 236.8bp
Average Position of motif in Background515.4 +/- 317.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAAGTTTMGC
CAAGCTT---
 G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

IRF6/MA1509.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CAAGTTTMGC-
--AGTTTCGGT
 G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C A C G T
A C G T A C G T C T G A A T C G G A C T G C A T C G A T G A T C T A C G C T A G A G C T

SIX1/MA1118.1/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAAGTTTMGC
TATCAGGTTAC--
 A C G T A C G T A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
C A G T T G C A G C A T G A T C C G T A C A T G C T A G G C A T C G A T G C T A G T A C A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAAGTTTMGC
GKVTCADRTTWC--
 A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T A C G T

PB0035.1_Irf5_1/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAAGTTTMGC-----
NTGGTTTCGGTTNNN
 G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C A C G T A C G T A C G T A C G T A C G T
A G C T G A C T C T A G A C T G A C G T G C A T A G C T A G T C C T A G C T A G G A C T G C A T G A C T G C T A C G A T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CAAGTTTMGC
AAGGCAAGTGT---
 A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAAGTTTMGC
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAAGTTTMGC----
TNTGGTTTCGATACN
 A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C A C G T A C G T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CAAGTTTMGC
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAAGTTTMGC
GCACGTAY---
 A C G T G T A C C G T A T G C A A C T G G C A T G A C T C G A T T G A C T A C G A G T C
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T A C G T