Information for 7-CGGTCAATCT (Motif 7)

A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G G T C A A C G T A C G T A T C G C G T A A G T C G T A C A C T G
p-value:1e-4
log p-value:-1.121e+01
Information Content per bp:1.899
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif40.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets286.7 +/- 142.3bp
Average Position of motif in Background618.5 +/- 293.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CGGTCAATCT-
NCTGTCAATCAN
 A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PH0169.1_Tgif1/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CGGTCAATCT-
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T A C G T
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

PH0141.1_Pknox2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------CGGTCAATCT
AAGCACCTGTCAATAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

PKNOX1/MA0782.2/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CGGTCAATCT--
NNGCTGTCACTCANN
 A C G T A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T A C G T A C G T
G A C T T C G A A T C G T G A C G C A T C T A G G A C T T A G C G C T A T G A C G A C T A G T C G C T A C G T A G C T A

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGGTCAATCT
-RRTCAATA-
 A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
A C G T C T A G C T G A A G C T G T A C C T G A C G T A A C G T C G T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CGGTCAATCT-
SCTGTCAVTCAV
 A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCAATCT
GCTGTCAA---
 A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CGGTCAATCT
GSCTGTCACTCA
 A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

PH0140.1_Pknox1/Jaspar

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CGGTCAATCT
AAAGACCTGTCAATCC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PBX3/MA1114.1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CGGTCAATCT---
NNNCCTGTCACTCANNN
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A C G T A T G C G T C A C G T A A C G T A G T C A C G T A C G T A C G T A C G T
T A G C A G T C T A C G A T G C T G A C G A C T A T C G G A C T A T G C G T C A T G A C G C A T A G T C G C T A T G A C T G A C A T G C