Information for 5-AGAAGTTCTT (Motif 5)

C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
Reverse Opposite:
T C G A C T G A A C T G C G T A G T C A A T G C A C G T A C G T A G T C A C G T
p-value:1e-5
log p-value:-1.277e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif367.5
Percentage of Background Sequences with motif0.82%
Average Position of motif in Targets312.9 +/- 143.4bp
Average Position of motif in Background494.8 +/- 293.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGAAGTTCTT-----
TACTAAGTACTTAAATG
 A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PH0112.1_Nkx2-3/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGAAGTTCTT----
CNTTAAGTACTTAANG
 A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T A C G T A C G T A C G T A C G T
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGAAGTTCTT-----
TTTTAAGTACTTAAATT
 A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T G C A T C G A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C G T A G C T A C G A T G A C T

NR1I3/MA1534.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AGAAGTTCTT
-AAAGTTCAT
 C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
A C G T C G T A C T G A C T G A A C T G A C G T C A G T A G T C C T G A G A C T

POL005.1_DPE/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAAGTTCTT
-GAAGATGTT
 C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
A C G T T C A G G T C A C T G A A T C G G C T A G A C T T A C G G A C T G A C T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGAAGTTCTT
NGAAGC----
 C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

OSR2/MA1646.1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----AGAAGTTCTT
AAACAGAAGCAG--
 A C G T A C G T A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAAGTTCTT----
ACTCCAAGTACTTGGAA
 A C G T A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T A C G T A C G T A C G T A C G T
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AGAAGTTCTT
TTAAGAGGAAGTTA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
A G C T C G A T C G T A C G T A T C A G T C G A C T A G A C T G C G T A C G T A T A C G G A C T C G A T G T A C A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGAAGTTCTT
TTAAGTGCTT
 C G T A A C T G G T C A C G T A T A C G A C G T G C A T G T A C A G C T A G C T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T