Information for 3-GGGGCATGCC (Motif 3)

A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C
Reverse Opposite:
C T A G A T C G A T G C C G T A A C G T C T A G A T G C A G T C A G T C A T G C
p-value:1e-7
log p-value:-1.648e+01
Information Content per bp:1.834
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif507.2
Percentage of Background Sequences with motif1.13%
Average Position of motif in Targets709.2 +/- 126.0bp
Average Position of motif in Background571.9 +/- 298.2bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGGCATGCC-
GGGGGAATCCCC
 A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGCATGCC-
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

ZNF682/MA1599.1/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GGGGCATGCC---
NNAGGGGCTTGGCCNN
 A C G T A C G T A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T A C G T A C G T
T C G A A G C T G C T A C A T G A T C G T C A G C T A G T A G C A C G T A C G T T C A G A T C G A G T C G A T C A G T C T C A G

HIC2/MA0738.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGGGCATGCC
NGTGGGCAT---
 A C G T A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T

RELB/MA1117.1/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGGGCATGCC
NNGGGGAATNC-
 A C G T A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C
A T G C G T A C A T C G C A T G C A T G C T A G C T G A G C T A G C A T G A C T G A T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGGGCATGCC--
AGGGGAATCCCCT
 A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGGCATGCC
GGGGATTTCC
 A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGGGCATGCC
GGGGATTTCC
 A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GGGGCATGCC-
NGGGGATTTCCC
 A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

PB0180.1_Sp4_2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGGGCATGCC----
NNGGCCACGCCTTTN
 A C G T A T C G C T A G C T A G T A C G A G T C C G T A G C A T A T C G A T G C A G T C A C G T A C G T A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G