Information for 3-CGTA (Motif 10)

A G T C A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A C T G
p-value:1e0
log p-value:-1.350e+00
Information Content per bp:1.530
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif27459.6
Percentage of Background Sequences with motif61.03%
Average Position of motif in Targets457.9 +/- 286.1bp
Average Position of motif in Background563.6 +/- 310.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.90
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GMEB2/MA0862.1/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---CGTA-
TTACGTAA
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T
A C G T C A G T C T G A G T A C A T C G A G C T T G C A T G C A

Gmeb1/MA0615.1/Jaspar

Match Rank:2
Score:0.77
Offset:-7
Orientation:forward strand
Alignment:-------CGTA------
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:3
Score:0.77
Offset:-7
Orientation:forward strand
Alignment:-------CGTA------
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0094.1_Zfp128_1/Jaspar

Match Rank:4
Score:0.75
Offset:-7
Orientation:forward strand
Alignment:-------CGTA------
TCTTTGGCGTACCCTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A T C G C A T C A G T C A G T C A T G C T A G A G T C C T A G A C G T C G T A G T A C T A G C A G T C A G C T G T C A C T G A

HOXA9/MA0594.2/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CGTA----
GTCGTAAACG
 A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T
T C A G G A C T G T A C T C A G A G C T G C T A G C T A G C T A G A T C T A C G

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CGTA
BGCACGTA
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------CGTA-------
TNNTTTCGTATTNNANN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C G A G C A T G A C T G A C T A T G C A T C G A C G T T G C A A C G T C G A T A C T G G C A T C T G A G A C T T A C G

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CGTA---
GCACGTACCC
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T
C A T G A G T C C T G A T G A C A T C G G A C T G T C A A G T C T A G C G A T C

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CGTA----
AGTCGTAAAAA
 A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T A C G T A C G T A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HIF1A/MA1106.1/Jaspar

Match Rank:10
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CGTA-
NNGCACGTNC
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T C G T A A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C