Information for 1-CCTATGTCCA (Motif 1)

G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G C T A G C T G A A G T C C G T A A C G T T G C A T C A G A C T G
p-value:1e-8
log p-value:-1.978e+01
Information Content per bp:1.757
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif29.17%
Number of Background Sequences with motif1748.2
Percentage of Background Sequences with motif3.89%
Average Position of motif in Targets384.1 +/- 201.1bp
Average Position of motif in Background497.5 +/- 295.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NEUROG2/MA0669.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CCTATGTCCA
AACATATGTC--
 A C G T A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
T C G A T G C A G A T C C T G A A C G T T G C A G C A T A C T G A G C T A G T C A C G T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CCTATGTCCA------
NNGTATGTGCACATNNN
 A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

NEUROG1/MA0623.2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCTATGTCCA
GACATATGTC--
 A C G T A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
T C A G T G C A A G T C C T G A A G C T C T G A A G C T A T C G A C G T A G T C A C G T A C G T

Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCTATGTCCA----
--TYTGACCASWRG
 G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G A C T A G T C C G A T A C T G C T G A T G A C G T A C C G T A A T C G G C A T C T G A C T A G

ATOH7/MA1468.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCTATGTCCA
AACATATGTC--
 A C G T A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
T C G A T G C A A G T C C T G A A G C T T G C A A C G T A C T G A C G T G A T C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CCTATGTCCA--
---ATGCCCACC
 G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Atoh1/MA0461.2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCTATGTCCA
ANCATATGTT--
 A C G T A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T

Bhlha15/MA0607.1/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCTATGTCCA
CCATATGT---
 A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCTATGTCCA------
NTNTATGTGCACATNNN
 A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTATGTCCA
ACCATATGTT--
 A C G T A C G T G T A C A G T C A C G T G T C A A C G T C T A G A G C T A G T C A G T C C G T A
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T