Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 50)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44918)	% of Background Sequences with Motif
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-3	-7.996e+00	0.1482	37.0	74.00%	22157.9	49.33%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-7.857e+00	0.1482	22.0	44.00%	9802.2	21.82%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-3	-7.733e+00	0.1482	16.0	32.00%	5874.3	13.08%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-5.567e+00	0.4204	40.0	80.00%	27526.4	61.29%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-5.180e+00	0.4953	20.0	40.00%	10368.3	23.08%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-5.007e+00	0.4953	34.0	68.00%	22294.7	49.64%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-5.006e+00	0.4953	19.0	38.00%	9772.7	21.76%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-2	-5.006e+00	0.4953	21.0	42.00%	11286.4	25.13%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-2	-4.661e+00	0.4953	22.0	44.00%	12399.7	27.61%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.590e+00	0.4953	19.0	38.00%	10148.3	22.60%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-4.365e+00	0.5087	8.0	16.00%	2841.4	6.33%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-4.136e+00	0.5863	30.0	60.00%	19709.1	43.88%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.912e+00	0.6770	13.0	26.00%	6376.1	14.20%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e-1	-3.865e+00	0.6770	37.0	74.00%	26553.8	59.12%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.845e+00	0.6770	34.0	68.00%	23724.4	52.82%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-3.711e+00	0.6770	23.0	46.00%	14258.9	31.75%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-3.373e+00	0.8871	15.0	30.00%	8336.0	18.56%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-3.340e+00	0.8871	28.0	56.00%	18999.9	42.30%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-3.325e+00	0.8871	15.0	30.00%	8387.9	18.68%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.324e+00	0.8871	27.0	54.00%	18150.1	40.41%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.265e+00	0.8871	32.0	64.00%	22688.6	50.52%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-1	-3.136e+00	0.8871	8.0	16.00%	3585.4	7.98%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.119e+00	0.8871	12.0	24.00%	6375.9	14.20%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.095e+00	0.8871	10.0	20.00%	4973.5	11.07%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e-1	-3.090e+00	0.8871	12.0	24.00%	6403.1	14.26%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.018e+00	0.8871	22.0	44.00%	14330.5	31.91%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.966e+00	0.8871	14.0	28.00%	8020.3	17.86%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.921e+00	0.8871	3.0	6.00%	765.7	1.70%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e-1	-2.921e+00	0.8871	36.0	72.00%	26943.1	59.99%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.914e+00	0.8871	20.0	40.00%	12823.3	28.55%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.879e+00	0.8871	19.0	38.00%	12056.0	26.84%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.878e+00	0.8871	5.0	10.00%	1867.8	4.16%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.866e+00	0.8871	16.0	32.00%	9681.8	21.56%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.814e+00	0.8871	6.0	12.00%	2517.4	5.61%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-2.813e+00	0.8871	44.0	88.00%	35138.4	78.24%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-2.797e+00	0.8871	26.0	52.00%	18057.0	40.20%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.770e+00	0.8871	37.0	74.00%	28138.4	62.65%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.753e+00	0.8871	15.0	30.00%	9039.7	20.13%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e-1	-2.694e+00	0.8871	22.0	44.00%	14798.7	32.95%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.649e+00	0.8871	18.0	36.00%	11561.5	25.74%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.646e+00	0.8871	8.0	16.00%	3971.0	8.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.626e+00	0.8871	10.0	20.00%	5410.4	12.05%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.615e+00	0.8871	15.0	30.00%	9213.1	20.51%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e-1	-2.533e+00	0.8871	34.0	68.00%	25690.1	57.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-2.512e+00	0.8871	15.0	30.00%	9347.2	20.81%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.507e+00	0.8871	21.0	42.00%	14245.9	31.72%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e-1	-2.506e+00	0.8871	24.0	48.00%	16792.6	37.39%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.503e+00	0.8871	16.0	32.00%	10154.8	22.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.364e+00	0.8871	6.0	12.00%	2836.9	6.32%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.353e+00	0.8871	8.0	16.00%	4236.9	9.43%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-2.341e+00	0.8871	7.0	14.00%	3540.9	7.88%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-2.332e+00	0.8871	25.0	50.00%	17949.9	39.97%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.295e+00	0.8871	20.0	40.00%	13744.0	30.60%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.260e+00	0.8871	13.0	26.00%	8110.2	18.06%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.250e+00	0.8871	18.0	36.00%	12154.7	27.06%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.216e+00	0.8871	15.0	30.00%	9761.3	21.73%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.212e+00	0.8871	8.0	16.00%	4375.3	9.74%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-2.211e+00	0.8871	21.0	42.00%	14727.1	32.79%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.201e+00	0.8871	26.0	52.00%	19057.7	42.43%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.192e+00	0.8871	4.0	8.00%	1652.3	3.68%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.181e+00	0.8871	21.0	42.00%	14778.8	32.90%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.169e+00	0.8871	17.0	34.00%	11458.3	25.51%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.165e+00	0.8871	30.0	60.00%	22684.4	50.51%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.161e+00	0.8871	25.0	50.00%	18254.1	40.64%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.109e+00	0.8871	3.0	6.00%	1089.8	2.43%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.067e+00	0.8871	3.0	6.00%	1110.8	2.47%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.054e+00	0.8871	25.0	50.00%	18452.1	41.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.025e+00	0.8871	10.0	20.00%	6087.4	13.55%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.997e+00	0.8871	18.0	36.00%	12571.9	27.99%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.990e+00	0.8871	18.0	36.00%	12584.3	28.02%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.982e+00	0.8871	1.0	2.00%	132.3	0.29%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.981e+00	0.8871	24.0	48.00%	17719.6	39.45%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.962e+00	0.8871	5.0	10.00%	2477.2	5.52%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.939e+00	0.8871	18.0	36.00%	12672.5	28.22%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.927e+00	0.8871	7.0	14.00%	3940.1	8.77%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.895e+00	0.8871	4.0	8.00%	1850.8	4.12%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-1.886e+00	0.8871	26.0	52.00%	19660.4	43.77%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.860e+00	0.8871	12.0	24.00%	7885.2	17.56%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.850e+00	0.8871	10.0	20.00%	6317.2	14.07%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.848e+00	0.8871	14.0	28.00%	9521.7	21.20%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.847e+00	0.8871	9.0	18.00%	5544.1	12.34%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.812e+00	0.8871	26.0	52.00%	19811.3	44.11%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.788e+00	0.8871	12.0	24.00%	7995.4	17.80%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.788e+00	0.8871	18.0	36.00%	12948.0	28.83%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.776e+00	0.8871	16.0	32.00%	11293.1	25.14%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-1.757e+00	0.8871	5.0	10.00%	2657.8	5.92%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.755e+00	0.8871	17.0	34.00%	12167.1	27.09%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.753e+00	0.8871	25.0	50.00%	19052.2	42.42%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-1.744e+00	0.8871	15.0	30.00%	10520.6	23.42%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.730e+00	0.8871	19.0	38.00%	13906.6	30.96%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.729e+00	0.8871	19.0	38.00%	13908.3	30.97%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.727e+00	0.8871	7.0	14.00%	4164.7	9.27%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.714e+00	0.8871	6.0	12.00%	3430.0	7.64%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.711e+00	0.8871	12.0	24.00%	8117.2	18.07%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.705e+00	0.8871	4.0	8.00%	1996.6	4.45%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.692e+00	0.8871	11.0	22.00%	7342.5	16.35%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.678e+00	0.8871	14.0	28.00%	9809.9	21.84%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.658e+00	0.8871	27.0	54.00%	21027.6	46.82%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.637e+00	0.8871	14.0	28.00%	9883.3	22.01%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.634e+00	0.8871	21.0	42.00%	15818.9	35.22%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-1.613e+00	0.8871	13.0	26.00%	9099.6	20.26%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.591e+00	0.8871	12.0	24.00%	8317.3	18.52%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.582e+00	0.8871	9.0	18.00%	5910.1	13.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.575e+00	0.8871	9.0	18.00%	5921.2	13.18%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.572e+00	0.8871	12.0	24.00%	8350.7	18.59%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.517e+00	0.9103	14.0	28.00%	10105.4	22.50%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.494e+00	0.9235	39.0	78.00%	32397.6	72.13%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.478e+00	0.9293	14.0	28.00%	10181.3	22.67%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.465e+00	0.9328	19.0	38.00%	14458.9	32.19%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.457e+00	0.9328	11.0	22.00%	7731.9	17.22%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.438e+00	0.9408	23.0	46.00%	17997.6	40.07%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.410e+00	0.9587	31.0	62.00%	25198.1	56.10%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.395e+00	0.9647	5.0	10.00%	3034.6	6.76%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.387e+00	0.9647	4.0	8.00%	2286.1	5.09%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.374e+00	0.9679	11.0	22.00%	7880.9	17.55%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.353e+00	0.9808	6.0	12.00%	3865.4	8.61%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.334e+00	0.9902	7.0	14.00%	4685.5	10.43%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.315e+00	1.0000	29.0	58.00%	23634.1	52.62%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.285e+00	1.0000	35.0	70.00%	29161.8	64.93%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.273e+00	1.0000	33.0	66.00%	27361.7	60.92%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.267e+00	1.0000	12.0	24.00%	8925.5	19.87%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.265e+00	1.0000	17.0	34.00%	13193.6	29.38%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-1.262e+00	1.0000	16.0	32.00%	12341.0	27.48%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.248e+00	1.0000	1.0	2.00%	302.8	0.67%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.247e+00	1.0000	24.0	48.00%	19356.2	43.10%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.243e+00	1.0000	4.0	8.00%	2442.2	5.44%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.239e+00	1.0000	30.0	60.00%	24732.6	55.07%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.238e+00	1.0000	15.0	30.00%	11537.1	25.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.238e+00	1.0000	16.0	32.00%	12396.2	27.60%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.233e+00	1.0000	3.0	6.00%	1692.8	3.77%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.229e+00	1.0000	16.0	32.00%	12418.0	27.65%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.228e+00	1.0000	21.0	42.00%	16764.0	37.32%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.205e+00	1.0000	28.0	56.00%	23027.5	51.27%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.203e+00	1.0000	18.0	36.00%	14211.3	31.64%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.203e+00	1.0000	8.0	16.00%	5713.6	12.72%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.200e+00	1.0000	6.0	12.00%	4083.7	9.09%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.198e+00	1.0000	6.0	12.00%	4086.9	9.10%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.196e+00	1.0000	29.0	58.00%	23949.1	53.32%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.185e+00	1.0000	8.0	16.00%	5745.3	12.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.168e+00	1.0000	3.0	6.00%	1755.4	3.91%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.165e+00	1.0000	21.0	42.00%	16931.5	37.70%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.158e+00	1.0000	2.0	4.00%	1018.5	2.27%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.156e+00	1.0000	26.0	52.00%	21378.6	47.60%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.147e+00	1.0000	12.0	24.00%	9184.2	20.45%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.137e+00	1.0000	11.0	22.00%	8356.9	18.61%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.136e+00	1.0000	28.0	56.00%	23219.3	51.70%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.109e+00	1.0000	3.0	6.00%	1817.7	4.05%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.108e+00	1.0000	25.0	50.00%	20624.3	45.92%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.103e+00	1.0000	21.0	42.00%	17101.7	38.08%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.100e+00	1.0000	4.0	8.00%	2617.2	5.83%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.095e+00	1.0000	4.0	8.00%	2623.1	5.84%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.091e+00	1.0000	14.0	28.00%	11030.7	24.56%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.083e+00	1.0000	11.0	22.00%	8475.3	18.87%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.065e+00	1.0000	23.0	46.00%	18973.6	42.24%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.052e+00	1.0000	24.0	48.00%	19898.5	44.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.045e+00	1.0000	13.0	26.00%	10280.4	22.89%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-1.039e+00	1.0000	2.0	4.00%	1115.5	2.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.036e+00	1.0000	31.0	62.00%	26207.1	58.35%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.034e+00	1.0000	1.0	2.00%	392.1	0.87%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.021e+00	1.0000	5.0	10.00%	3544.3	7.89%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.018e+00	1.0000	21.0	42.00%	17344.0	38.62%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.005e+00	1.0000	25.0	50.00%	20928.3	46.60%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-9.629e-01	1.0000	19.0	38.00%	15745.5	35.06%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-9.459e-01	1.0000	8.0	16.00%	6216.9	13.84%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.413e-01	1.0000	7.0	14.00%	5371.3	11.96%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.394e-01	1.0000	14.0	28.00%	11427.2	25.44%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.382e-01	1.0000	1.0	2.00%	443.6	0.99%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-9.380e-01	1.0000	6.0	12.00%	4527.4	10.08%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-9.355e-01	1.0000	3.0	6.00%	2021.6	4.50%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-9.282e-01	1.0000	7.0	14.00%	5398.7	12.02%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.224e-01	1.0000	7.0	14.00%	5410.7	12.05%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-9.130e-01	1.0000	4.0	8.00%	2883.7	6.42%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-9.075e-01	1.0000	1.0	2.00%	461.2	1.03%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-8.931e-01	1.0000	25.0	50.00%	21286.3	47.39%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-8.915e-01	1.0000	13.0	26.00%	10687.8	23.80%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.856e-01	1.0000	18.0	36.00%	15101.7	33.62%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-8.631e-01	1.0000	2.0	4.00%	1287.6	2.87%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-8.614e-01	1.0000	24.0	48.00%	20502.4	45.65%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-8.553e-01	1.0000	5.0	10.00%	3831.2	8.53%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-8.379e-01	1.0000	5.0	10.00%	3864.1	8.60%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.348e-01	1.0000	5.0	10.00%	3870.6	8.62%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.342e-01	1.0000	6.0	12.00%	4735.2	10.54%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.260e-01	1.0000	9.0	18.00%	7366.5	16.40%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.236e-01	1.0000	10.0	20.00%	8248.8	18.37%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-8.106e-01	1.0000	4.0	8.00%	3053.9	6.80%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.096e-01	1.0000	13.0	26.00%	10927.5	24.33%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-7.999e-01	1.0000	2.0	4.00%	1359.8	3.03%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.990e-01	1.0000	2.0	4.00%	1360.1	3.03%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.956e-01	1.0000	15.0	30.00%	12738.4	28.36%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-7.954e-01	1.0000	11.0	22.00%	9206.1	20.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.948e-01	1.0000	2.0	4.00%	1365.7	3.04%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.948e-01	1.0000	2.0	4.00%	1365.7	3.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.932e-01	1.0000	5.0	10.00%	3952.6	8.80%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.924e-01	1.0000	19.0	38.00%	16295.5	36.28%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.907e-01	1.0000	19.0	38.00%	16301.8	36.30%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-7.887e-01	1.0000	16.0	32.00%	13646.2	30.38%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.700e-01	1.0000	40.0	80.00%	35152.4	78.27%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.641e-01	1.0000	27.0	54.00%	23523.4	52.37%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-7.576e-01	1.0000	12.0	24.00%	10203.6	22.72%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.475e-01	1.0000	1.0	2.00%	572.3	1.27%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-7.409e-01	1.0000	3.0	6.00%	2304.9	5.13%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-7.229e-01	1.0000	4.0	8.00%	3216.0	7.16%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.106e-01	1.0000	9.0	18.00%	7684.0	17.11%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.095e-01	1.0000	14.0	28.00%	12138.2	27.03%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-7.079e-01	1.0000	12.0	24.00%	10362.6	23.07%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-7.052e-01	1.0000	13.0	26.00%	11262.6	25.08%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.034e-01	1.0000	4.0	8.00%	3255.6	7.25%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.789e-01	1.0000	2.0	4.00%	1517.9	3.38%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.697e-01	1.0000	1.0	2.00%	639.8	1.42%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-6.481e-01	1.0000	20.0	40.00%	17727.4	39.47%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.404e-01	1.0000	6.0	12.00%	5195.3	11.57%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.386e-01	1.0000	20.0	40.00%	17766.6	39.56%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.360e-01	1.0000	8.0	16.00%	7011.7	15.61%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.350e-01	1.0000	16.0	32.00%	14201.0	31.62%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.315e-01	1.0000	17.0	34.00%	15110.3	33.64%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.274e-01	1.0000	1.0	2.00%	680.0	1.51%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.262e-01	1.0000	9.0	18.00%	7943.8	17.69%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.228e-01	1.0000	9.0	18.00%	7954.7	17.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.228e-01	1.0000	3.0	6.00%	2517.0	5.60%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-6.198e-01	1.0000	8.0	16.00%	7061.2	15.72%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.194e-01	1.0000	34.0	68.00%	30325.0	67.52%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-6.163e-01	1.0000	26.0	52.00%	23219.9	51.70%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.092e-01	1.0000	2.0	4.00%	1623.6	3.62%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.073e-01	1.0000	10.0	20.00%	8909.2	19.84%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.047e-01	1.0000	3.0	6.00%	2552.6	5.68%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-5.949e-01	1.0000	6.0	12.00%	5321.6	11.85%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-5.903e-01	1.0000	13.0	26.00%	11679.4	26.00%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-5.896e-01	1.0000	17.0	34.00%	15282.4	34.03%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.826e-01	1.0000	2.0	4.00%	1667.3	3.71%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.820e-01	1.0000	2.0	4.00%	1668.5	3.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.797e-01	1.0000	2.0	4.00%	1672.5	3.72%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.733e-01	1.0000	5.0	10.00%	4466.3	9.94%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.663e-01	1.0000	5.0	10.00%	4485.1	9.99%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-5.576e-01	1.0000	27.0	54.00%	24371.6	54.26%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.387e-01	1.0000	6.0	12.00%	5489.6	12.22%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.289e-01	1.0000	2.0	4.00%	1763.5	3.93%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-5.251e-01	1.0000	33.0	66.00%	29841.5	66.44%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.249e-01	1.0000	4.0	8.00%	3669.0	8.17%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-5.234e-01	1.0000	24.0	48.00%	21857.7	48.67%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-5.208e-01	1.0000	1.0	2.00%	802.7	1.79%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.203e-01	1.0000	14.0	28.00%	12874.1	28.66%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.200e-01	1.0000	1.0	2.00%	803.8	1.79%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.177e-01	1.0000	8.0	16.00%	7405.8	16.49%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.938e-01	1.0000	14.0	28.00%	12993.8	28.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.898e-01	1.0000	5.0	10.00%	4710.2	10.49%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-4.884e-01	1.0000	13.0	26.00%	12107.1	26.96%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.868e-01	1.0000	3.0	6.00%	2817.6	6.27%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.706e-01	1.0000	9.0	18.00%	8511.7	18.95%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.702e-01	1.0000	29.0	58.00%	26571.6	59.16%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-4.679e-01	1.0000	30.0	60.00%	27467.2	61.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.642e-01	1.0000	11.0	22.00%	10384.8	23.12%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.632e-01	1.0000	37.0	74.00%	33629.5	74.88%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.579e-01	1.0000	22.0	44.00%	20398.7	45.42%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.540e-01	1.0000	6.0	12.00%	5775.0	12.86%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.514e-01	1.0000	1.0	2.00%	900.1	2.00%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-4.512e-01	1.0000	5.0	10.00%	4836.9	10.77%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.467e-01	1.0000	2.0	4.00%	1932.7	4.30%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-4.441e-01	1.0000	19.0	38.00%	17773.0	39.57%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.386e-01	1.0000	1.0	2.00%	920.3	2.05%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.346e-01	1.0000	4.0	8.00%	3931.2	8.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.342e-01	1.0000	4.0	8.00%	3932.3	8.76%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-4.339e-01	1.0000	4.0	8.00%	3933.9	8.76%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.280e-01	1.0000	26.0	52.00%	24134.2	53.73%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.265e-01	1.0000	19.0	38.00%	17867.5	39.78%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.180e-01	1.0000	1.0	2.00%	954.8	2.13%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-4.105e-01	1.0000	10.0	20.00%	9707.3	21.61%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.037e-01	1.0000	8.0	16.00%	7865.4	17.51%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-4.033e-01	1.0000	6.0	12.00%	5968.2	13.29%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.985e-01	1.0000	1.0	2.00%	988.9	2.20%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-3.930e-01	1.0000	16.0	32.00%	15330.4	34.13%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-3.916e-01	1.0000	11.0	22.00%	10732.0	23.89%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-3.838e-01	1.0000	23.0	46.00%	21713.0	48.34%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.819e-01	1.0000	31.0	62.00%	28812.7	64.15%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.808e-01	1.0000	3.0	6.00%	3116.1	6.94%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-3.794e-01	1.0000	6.0	12.00%	6067.7	13.51%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.729e-01	1.0000	18.0	36.00%	17269.2	38.45%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.723e-01	1.0000	1.0	2.00%	1037.8	2.31%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.697e-01	1.0000	1.0	2.00%	1042.3	2.32%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.668e-01	1.0000	4.0	8.00%	4164.3	9.27%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-3.569e-01	1.0000	30.0	60.00%	28084.1	62.53%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-3.504e-01	1.0000	16.0	32.00%	15582.3	34.69%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.502e-01	1.0000	7.0	14.00%	7162.3	15.95%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-3.495e-01	1.0000	29.0	58.00%	27252.8	60.68%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.490e-01	1.0000	6.0	12.00%	6201.2	13.81%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.481e-01	1.0000	7.0	14.00%	7172.2	15.97%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.449e-01	1.0000	8.0	16.00%	8147.8	18.14%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-3.425e-01	1.0000	22.0	44.00%	21076.3	46.93%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-3.410e-01	1.0000	12.0	24.00%	11942.8	26.59%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.382e-01	1.0000	9.0	18.00%	9135.5	20.34%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.332e-01	1.0000	4.0	8.00%	4295.1	9.56%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.300e-01	1.0000	24.0	48.00%	22951.0	51.10%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.275e-01	1.0000	1.0	2.00%	1131.0	2.52%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.234e-01	1.0000	19.0	38.00%	18494.9	41.18%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.199e-01	1.0000	4.0	8.00%	4350.9	9.69%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-3.191e-01	1.0000	8.0	16.00%	8284.6	18.45%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.072e-01	1.0000	4.0	8.00%	4405.2	9.81%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.030e-01	1.0000	8.0	16.00%	8374.4	18.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.007e-01	1.0000	39.0	78.00%	36150.2	80.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.997e-01	1.0000	1.0	2.00%	1197.5	2.67%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.919e-01	1.0000	13.0	26.00%	13187.5	29.36%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.892e-01	1.0000	1.0	2.00%	1224.8	2.73%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.858e-01	1.0000	6.0	12.00%	6516.7	14.51%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.857e-01	1.0000	1.0	2.00%	1233.3	2.75%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.843e-01	1.0000	2.0	4.00%	2390.5	5.32%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.835e-01	1.0000	1.0	2.00%	1239.8	2.76%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.787e-01	1.0000	7.0	14.00%	7543.0	16.79%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.722e-01	1.0000	7.0	14.00%	7581.5	16.88%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.710e-01	1.0000	1.0	2.00%	1274.0	2.84%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.707e-01	1.0000	17.0	34.00%	17047.9	37.96%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-2.702e-01	1.0000	10.0	20.00%	10500.0	23.38%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-2.688e-01	1.0000	13.0	26.00%	13351.0	29.73%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.683e-01	1.0000	6.0	12.00%	6614.3	14.73%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.605e-01	1.0000	5.0	10.00%	5652.8	12.59%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-2.579e-01	1.0000	2.0	4.00%	2489.0	5.54%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.546e-01	1.0000	4.0	8.00%	4656.6	10.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.546e-01	1.0000	12.0	24.00%	12514.0	27.86%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.541e-01	1.0000	6.0	12.00%	6698.6	14.91%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.540e-01	1.0000	8.0	16.00%	8676.9	19.32%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-2.489e-01	1.0000	12.0	24.00%	12556.4	27.96%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.474e-01	1.0000	7.0	14.00%	7736.4	17.23%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.470e-01	1.0000	2.0	4.00%	2533.4	5.64%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.406e-01	1.0000	2.0	4.00%	2560.4	5.70%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.359e-01	1.0000	3.0	6.00%	3691.4	8.22%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-2.349e-01	1.0000	3.0	6.00%	3696.6	8.23%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-2.332e-01	1.0000	14.0	28.00%	14564.7	32.43%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-2.285e-01	1.0000	23.0	46.00%	22837.9	50.85%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.229e-01	1.0000	4.0	8.00%	4832.3	10.76%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.223e-01	1.0000	6.0	12.00%	6901.2	15.37%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-2.207e-01	1.0000	6.0	12.00%	6912.3	15.39%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-2.184e-01	1.0000	10.0	20.00%	10882.1	24.23%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-2.130e-01	1.0000	9.0	18.00%	9953.7	22.16%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.116e-01	1.0000	1.0	2.00%	1464.6	3.26%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.075e-01	1.0000	20.0	40.00%	20327.9	45.26%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.069e-01	1.0000	7.0	14.00%	8020.3	17.86%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.057e-01	1.0000	1.0	2.00%	1487.0	3.31%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.956e-01	1.0000	4.0	8.00%	5002.9	11.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.925e-01	1.0000	10.0	20.00%	11102.3	24.72%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.880e-01	1.0000	2.0	4.00%	2811.6	6.26%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.867e-01	1.0000	7.0	14.00%	8181.6	18.22%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-1.835e-01	1.0000	10.0	20.00%	11184.4	24.90%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.802e-01	1.0000	16.0	32.00%	16926.5	37.69%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.798e-01	1.0000	11.0	22.00%	12191.8	27.14%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.790e-01	1.0000	18.0	36.00%	18788.8	41.83%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.786e-01	1.0000	4.0	8.00%	5120.5	11.40%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.777e-01	1.0000	9.0	18.00%	10257.7	22.84%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.729e-01	1.0000	13.0	26.00%	14179.2	31.57%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.727e-01	1.0000	2.0	4.00%	2897.1	6.45%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.679e-01	1.0000	13.0	26.00%	14232.9	31.69%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.617e-01	1.0000	7.0	14.00%	8401.8	18.71%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-1.543e-01	1.0000	9.0	18.00%	10488.7	23.35%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.524e-01	1.0000	6.0	12.00%	7458.4	16.61%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.509e-01	1.0000	13.0	26.00%	14421.1	32.11%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.508e-01	1.0000	2.0	4.00%	3034.5	6.76%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.484e-01	1.0000	1.0	2.00%	1745.1	3.89%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-1.455e-01	1.0000	17.0	34.00%	18251.5	40.64%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.395e-01	1.0000	17.0	34.00%	18327.1	40.81%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.306e-01	1.0000	4.0	8.00%	5517.3	12.28%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.303e-01	1.0000	14.0	28.00%	15631.9	34.80%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.289e-01	1.0000	4.0	8.00%	5534.2	12.32%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.206e-01	1.0000	7.0	14.00%	8839.1	19.68%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.165e-01	1.0000	4.0	8.00%	5660.5	12.60%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.097e-01	1.0000	1.0	2.00%	1989.2	4.43%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.063e-01	1.0000	5.0	10.00%	6885.3	15.33%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-9.980e-02	1.0000	12.0	24.00%	14152.6	31.51%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-9.451e-02	1.0000	19.0	38.00%	20849.1	46.42%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.258e-02	1.0000	1.0	2.00%	2127.8	4.74%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.104e-02	1.0000	17.0	34.00%	19065.1	42.45%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.859e-02	1.0000	4.0	8.00%	5995.8	13.35%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.827e-02	1.0000	1.0	2.00%	2166.2	4.82%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-8.483e-02	1.0000	2.0	4.00%	3611.9	8.04%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.235e-02	1.0000	5.0	10.00%	7217.0	16.07%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-7.751e-02	1.0000	10.0	20.00%	12564.4	27.97%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.616e-02	1.0000	1.0	2.00%	2287.2	5.09%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-7.476e-02	1.0000	5.0	10.00%	7339.8	16.34%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.976e-02	1.0000	3.0	6.00%	5084.2	11.32%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.396e-02	1.0000	3.0	6.00%	5179.3	11.53%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.361e-02	1.0000	17.0	34.00%	19642.8	43.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.349e-02	1.0000	2.0	4.00%	4065.5	9.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.247e-02	1.0000	15.0	30.00%	18051.1	40.19%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-5.223e-02	1.0000	7.0	14.00%	10001.0	22.27%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-5.135e-02	1.0000	8.0	16.00%	11091.7	24.70%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.907e-02	1.0000	1.0	2.00%	2649.9	5.90%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.865e-02	1.0000	1.0	2.00%	2656.6	5.91%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.830e-02	1.0000	1.0	2.00%	2662.7	5.93%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.877e-02	1.0000	10.0	20.00%	13555.1	30.18%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-3.706e-02	1.0000	2.0	4.00%	4420.6	9.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.642e-02	1.0000	5.0	10.00%	8218.8	18.30%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.462e-02	1.0000	1.0	2.00%	2937.8	6.54%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.350e-02	1.0000	1.0	2.00%	2964.8	6.60%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.199e-02	1.0000	2.0	4.00%	4561.7	10.16%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.967e-02	1.0000	7.0	14.00%	10725.9	23.88%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.865e-02	1.0000	1.0	2.00%	3093.2	6.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.831e-02	1.0000	11.0	22.00%	14999.9	33.40%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.461e-02	1.0000	2.0	4.00%	4810.5	10.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.430e-02	1.0000	12.0	24.00%	16208.7	36.09%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.341e-02	1.0000	2.0	4.00%	4857.0	10.81%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.896e-02	1.0000	7.0	14.00%	11269.6	25.09%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.477e-02	1.0000	1.0	2.00%	3638.9	8.10%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.305e-03	1.0000	9.0	18.00%	14565.6	32.43%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.437e-03	1.0000	1.0	2.00%	5095.4	11.34%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.274e-03	1.0000	6.0	12.00%	12950.1	28.83%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	0.0	0.00%	487.2	1.08%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	828.5	1.84%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	0.0	0.00%	828.5	1.84%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-0.000e+00	1.0000	0.0	0.00%	126.7	0.28%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-0.000e+00	1.0000	0.0	0.00%	1585.8	3.53%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-0.000e+00	1.0000	0.0	0.00%	571.6	1.27%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-0.000e+00	1.0000	0.0	0.00%	456.1	1.02%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	0.0	0.00%	486.9	1.08%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1719.2	3.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	1497.0	3.33%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2307.3	5.14%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-0.000e+00	1.0000	0.0	0.00%	2307.4	5.14%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	142.4	0.32%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1859.5	4.14%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	379.6	0.85%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	21.8	0.05%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-0.000e+00	1.0000	0.0	0.00%	1358.8	3.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-0.000e+00	1.0000	0.0	0.00%	43.9	0.10%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	316.1	0.70%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-0.000e+00	1.0000	0.0	0.00%	1066.2	2.37%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-0.000e+00	1.0000	0.0	0.00%	1353.1	3.01%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	0.0	0.00%	2118.1	4.72%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-0.000e+00	1.0000	0.0	0.00%	176.0	0.39%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	168.7	0.38%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	0.0	0.00%	1866.4	4.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-0.000e+00	1.0000	0.0	0.00%	136.0	0.30%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	0.0	0.00%	1334.0	2.97%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-0.000e+00	1.0000	0.0	0.00%	1572.3	3.50%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	0.0	0.00%	423.7	0.94%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-0.000e+00	1.0000	0.0	0.00%	1680.1	3.74%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-0.000e+00	1.0000	0.0	0.00%	210.5	0.47%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-0.000e+00	1.0000	0.0	0.00%	180.3	0.40%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-0.000e+00	1.0000	0.0	0.00%	258.5	0.58%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	0.0	0.00%	798.1	1.78%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	0.000e+00	1.0000	0.0	0.00%	5278.0	11.75%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	1393.4	3.10%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	0.0	0.00%	507.8	1.13%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	510.6	1.14%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	31.7	0.07%