Information for 7-CTGCCAACTC (Motif 6)

A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
Reverse Opposite:
A C T G G T C A C T A G A G C T A C G T A T C G A C T G A T G C T G C A C T A G
p-value:1e-6
log p-value:-1.382e+01
Information Content per bp:1.847
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.00%
Number of Background Sequences with motif949.2
Percentage of Background Sequences with motif2.11%
Average Position of motif in Targets659.1 +/- 319.4bp
Average Position of motif in Background541.6 +/- 299.2bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAACTC
GGTGCCAAGT-
 A C G T A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CTGCCAACTC
CGTGCCAAG--
 A C G T A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTC
TTGCCAAG--
 A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTC
ATGCCAACC-
 A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGCCAACTC
-TGCCAGCB-
 A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
A C G T G A C T C T A G A T G C A G T C G T C A T A C G A T G C A T C G A C G T

NFIC/MA0161.2/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAACTC
NNTGCCAAGNN
 A C G T A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
G C A T T A G C G C A T C T A G G T A C A G T C C G T A T G C A A C T G C G A T C T G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTGCCAACTC---
ACTATGCCAACCTACC
 A C G T A C G T A C G T A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGCCAACTC
-TGTCANYT-
 A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
A C G T A G C T C A T G G C A T G A T C T G C A C T A G G A T C A C G T A C G T

ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGCCAACTC-----
CTGCCWVCTTTTRTA
 A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G T C G A C T A C T G G A T C G T A C C G T A T G A C A G T C C G A T A G C T A C G T A C G T C T A G G A C T C T G A

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCAACTC
GCTGTCAA---
 A C G T A G T C A C G T A T C G A G T C A T G C C G T A C T G A G A T C A C G T A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T