Information for 5-ATTATAAGAC (Motif 4)

C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C
Reverse Opposite:
A T C G A C G T G T A C A C G T A C G T C G T A C A G T C G T A G T C A A C G T
p-value:1e-6
log p-value:-1.517e+01
Information Content per bp:1.866
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.00%
Number of Background Sequences with motif384.1
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets565.6 +/- 275.2bp
Average Position of motif in Background474.7 +/- 329.9bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0174.1_Sox30_2/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----ATTATAAGAC--
TAAGATTATAATACGG
 A C G T A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T
G A C T G T C A C G T A A C T G G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G C A T A G C T A C G T A C G

PB0079.1_Sry_1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----ATTATAAGAC--
TATAATTATAATATTC
 A C G T A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0064.1_Sox14_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATTATAAGAC--
GCTAATTATAATTATC
 A C G T A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ATTATAAGAC--
TTTAATTATAATTAAG
 A C G T A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T
G A C T G C A T G A C T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C A T G

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---ATTATAAGAC--
NNNTTTNTAATACNG
 A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ATTATAAGAC----
NNNATTTTACGACNNTN
 A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXC9/MA0485.2/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:ATTATAAGAC
NTTTTACGAC
 C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C
C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXB9/MA1503.1/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATTATAAGAC
NTTTTACGAC
 C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C
C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXD10/MA1506.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATTATAAGAC-
NTTTTACGACC
 C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T
C T A G C G A T C A G T A C G T G C A T G T C A A G T C A C T G T C G A A G T C A G T C

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---ATTATAAGAC----
ANNATTTTACGACNTNA
 A C G T A C G T A C G T C G T A A C G T C G A T G T C A A C G T C G T A C G T A A C T G C G T A T A G C A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A