Information for 3-TTAAAGAGTA (Motif 3)

A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
Reverse Opposite:
A G C T C T G A G T A C C G A T T A G C A C G T A C G T A C G T G T C A C G T A
p-value:1e-7
log p-value:-1.659e+01
Information Content per bp:1.852
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif22.00%
Number of Background Sequences with motif1192.1
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets443.1 +/- 251.6bp
Average Position of motif in Background461.1 +/- 284.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTAAAGAGTA-
GGTTAAACATTAA
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A A C G T
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAAAGAGTA-
GTTAATNATTAA
 A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A A C G T
C T A G A C G T G C A T T C G A G T C A G C A T A T C G C G T A C A G T A G C T C T G A T G C A

Arid3a/MA0151.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTAAAGAGTA
ATTAAA-----
 A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

HNF1A/MA0046.2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TTAAAGAGTA---
AGTTAATGATTAACT
 A C G T A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A A C G T A C G T A C G T
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TTAAAGAGTA
NGCAATTAAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

HNF1B/MA0153.2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTAAAGAGTA--
GTTAATGATTAAC
 A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A A C G T A C G T
C A T G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C T G A T C G A G A T C

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTAAAGAGTA
TTAATTAG--
 A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
C G A T A G C T C G T A C G T A A G C T C G A T C T G A A T C G A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTAAAGAGTA
NTAATGAGCT
 A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

TCF7/MA0769.2/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTAAAGAGTA
ANATCAAAGNN--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
C G T A A T G C G C T A G C A T T G A C G C T A G C T A C G T A A C T G T C A G T G C A A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TTAAAGAGTA
GTAAACA---
 A C G T A C G T C G T A C G T A C G T A A T C G C G T A A C T G G A C T C T G A
C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T