Information for 5-TCGA (Motif 12)

A C G T A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G C G T A
p-value:1e0
log p-value:-1.095e+00
Information Content per bp:1.530
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif50.00%
Number of Background Sequences with motif20862.4
Percentage of Background Sequences with motif46.00%
Average Position of motif in Targets526.7 +/- 256.2bp
Average Position of motif in Background552.6 +/- 310.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.56
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TCGA--
NTNATCGATA
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T
G C A T A G C T C A G T T C G A A G C T G A T C C T A G T C G A A C G T T G C A

CUX2/MA0755.1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCGA---
TAATCGATAA
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
G C A T C T G A C T G A A G C T A G T C C T A G C G T A G C A T G C T A G C T A

CUX1/MA0754.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TCGA---
TAATCGATAA
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TCGA---
NTATYGATCH
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T
C T A G C A G T C G T A A C G T A G T C A C T G C G T A A G C T A G T C G A T C

Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCGA--
TATTGAYY
 A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T
G C A T C G T A C G A T G A C T A C T G C T G A G A C T G A T C

ONECUT2/MA0756.1/Jaspar

Match Rank:6
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------TCGA----
AAAAAATCGATAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C G A C T G A C G T A G C T A C T G A C T G A A C G T G T A C T C A G G C T A G C A T C G T A G C T A G C A T

PB0034.1_Irf4_1/Jaspar

Match Rank:7
Score:0.61
Offset:-7
Orientation:reverse strand
Alignment:-------TCGA----
TNTGGTTTCGATACN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G C A T A C G T G A C T C T A G A T C G C G A T C G A T A C G T A G T C C T A G C T G A G C A T G C T A G A T C A C T G

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCGA-
HNRAATCAAT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------TCGA----
NNAATTCTCGNTNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A

PB0036.1_Irf6_1/Jaspar

Match Rank:10
Score:0.60
Offset:-9
Orientation:reverse strand
Alignment:---------TCGA----
NNNTTGGTTTCGNTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C G T A C G T A C G T A C G T
G C T A G T A C G C A T A C G T A G C T C T A G A C T G A C G T G C A T A C G T A G T C C T A G C T G A G A C T G A T C G C T A C A T G