Information for 1-GCTA (Motif 10)

A C T G A G T C A C G T C G T A
Reverse Opposite:
A C G T C G T A A C T G A G T C
p-value:1e-1
log p-value:-2.718e+00
Information Content per bp:1.530
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif96.00%
Number of Background Sequences with motif40190.9
Percentage of Background Sequences with motif88.63%
Average Position of motif in Targets513.8 +/- 290.1bp
Average Position of motif in Background532.1 +/- 323.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)2.87
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GCTA
NGCTN
 A C G T A C T G A G T C A C G T C G T A
T A C G A C T G A G T C A C G T A T C G

PB0155.1_Osr2_2/Jaspar

Match Rank:2
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCTA--------
ACTTGCTACCTACACC
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCTA--------
ACATGCTACCTAATAC
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

OSR1/MA1542.1/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCTA-----
TGCTACTGTT
 A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T T C A G A G T C G A C T G C T A G T A C A G C T C T A G A G C T C A G T

PB0051.1_Osr2_1/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCTA--------
CNNNGCTACTGTANNN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GCTA--------
TNNTGCTACTGTNNNN
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCTA-----
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------GCTA-----
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.65
Offset:-10
Orientation:reverse strand
Alignment:----------GCTA---------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

RFX1/MA0509.2/Jaspar

Match Rank:10
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GCTA-----
CTGTTGCTATGGCA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A G T C C A G T C T A G A G C T G A C T C T A G G A T C A G C T C T G A C A G T C T A G T C A G G T A C C T G A