Information for 3-AAGTCTTGAA (Motif 3)

C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A
Reverse Opposite:
C G A T A C G T G T A C C G T A C G T A A T C G C G T A G T A C A C G T A C G T
p-value:1e-8
log p-value:-1.895e+01
Information Content per bp:1.845
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.00%
Number of Background Sequences with motif1203.0
Percentage of Background Sequences with motif2.65%
Average Position of motif in Targets481.7 +/- 250.4bp
Average Position of motif in Background462.9 +/- 351.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----AAGTCTTGAA-
ATGGAAAGTCGTAAAA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PH0047.1_Hoxa11/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTTGAA----
TAAAGTCGTAAAACAT
 A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTTGAA----
TAAAGTCGTAAAATAG
 A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AAGTCTTGAA----
NAAANTTATTGAANCAN
 A C G T A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTTGAA----
TAAAGTCGTAAAACGT
 A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGTCTTGAA--
HDGYAATGAAAN
 C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AAGTCTTGAA-----
TAAGGTCGTAAAATCCT
 A C G T A C G T C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGTCTTGAA-
-GGYAATGAAA
 C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T
A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Smad4/MA1153.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAGTCTTGAA
-TGTCTAGA-
 C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A
A C G T G A C T A C T G A C G T A G T C A C G T C T G A A C T G T G C A A C G T

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAGTCTTGAA------
NNNTATTGAATTGNNN
 C G T A C G T A A C T G C G A T T A G C G C A T C G A T A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T