Information for 2-GAACGTTAAG (Motif 2)

A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A C G T A A T G C A T C G A C G T A C G T A T G C
p-value:1e-8
log p-value:-2.026e+01
Information Content per bp:1.897
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.00%
Number of Background Sequences with motif181.3
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets460.9 +/- 270.8bp
Average Position of motif in Background467.0 +/- 283.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MYBL1/MA0776.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAACGTTAAG---
-ACCGTTAACGGT
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
A C G T C T G A T G A C T A G C T C A G G A C T G C A T C G T A T C G A G T A C A T C G C A T G G A C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAACGTTAAG-------
-AATNTTAAGTGGNTNN
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

BARHL1/MA0877.2/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAACGTTAAG
--NCGTTTAN
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G
A C G T A C G T G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G

BARHL2/MA0635.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAACGTTAAG-
-ANCGTTTANN
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T
A C G T C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C

PB0109.1_Bbx_2/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAACGTTAAG------
TGATTGTTAACAGTTGG
 A C G T A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

NR6A1/MA1541.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAACGTTAAG-----
GTCAAGTTCAAGGTCAA
 A C G T A C G T A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G A G C T A T G C C T G A T G C A C A T G C A G T A G C T A G T C C G T A G T C A C A T G C A T G A C G T A G T C C T G A C G T A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAACGTTAAG--------
-NTNNTTAAGTGGNTNAN
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GAACGTTAAG----
-----TTAAGTGGT
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAACGTTAAG
GGTTAAACATTAA-
 A C G T A C G T A C G T A C G T A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T

Nkx3-2/MA0122.3/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GAACGTTAAG-------
----NTTAAGTGGTTNN
 A T C G C G T A C G T A A T G C T A C G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C G A T C T G A C G T A C A T G C G A T C T A G A C T G G C A T G C A T G C T A G C A T