Information for 5-GAGCTGCSCC (Motif 5)

A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
Reverse Opposite:
A C T G A C T G T A G C A T C G A G T C C G T A A C T G A G T C A G C T A G T C
p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.858
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.37%
Number of Background Sequences with motif909.0
Percentage of Background Sequences with motif2.03%
Average Position of motif in Targets562.0 +/- 246.9bp
Average Position of motif in Background587.7 +/- 376.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH2/MA1529.1/Jaspar

Match Rank:1
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------GAGCTGCSCC--
GGGCCGCAGCTGCGTCCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C A C G T A C G T
C T A G C A T G C T A G G A T C T G A C C A T G A G T C C T G A A T C G T A G C A G C T A T C G G A T C C A T G A G C T G T A C G T A C G A T C

PB0110.1_Bcl6b_2/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GAGCTGCSCC-----
ATCCCCGCCCCTAAAA
 A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C A C G T A C G T A C G T A C G T A C G T
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A

Sp1(Zf)/Promoter/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCSCC
GGGGGCGGGGCC
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCSCC
DGCAGCTGCYSS
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCSCC
NNCAGCTGNN--
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCSCC
CGGAGC------
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGCTGCSCC----
--GCTCCGCCCMCY
 A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCTGCSCC
AGCAGCTGCTNN
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

ZNF341/MA1655.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCTGCSCC
GGGAACAGCCAC
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
C A T G C T A G T A C G T G C A C T G A A T G C T C G A A T C G A T G C G T A C T C G A T A G C

NHLH1/MA0048.2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCSCC
CGCAGCTGCG--
 A C G T A C G T A C T G C T G A A C T G A G T C G C A T A C T G A T G C A T C G A G T C A G T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T