Information for 4-CATCAGCAGC (Motif 4)

G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A G T C A G C T C T A G G T C A C G A T A C T G
p-value:1e-6
log p-value:-1.487e+01
Information Content per bp:1.864
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.49%
Number of Background Sequences with motif1767.5
Percentage of Background Sequences with motif3.95%
Average Position of motif in Targets602.4 +/- 272.8bp
Average Position of motif in Background564.6 +/- 322.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0003.1_Ascl2_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CATCAGCAGC-------
NNNNAGCAGCTGCTGAN
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

OSR2/MA1646.1/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CATCAGCAGC--
AAACAGAAGCAG
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T
G T C A G T C A T G C A T A G C C T G A T A C G C G T A T C G A C T A G A G T C G T C A T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.65
Offset:6
Orientation:forward strand
Alignment:CATCAGCAGC-
------CAGCC
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CATCAGCAGC--
-CACAGCAGGGG
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T
A C G T T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CATCAGCAGC-
---CAGCTGNT
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CATCAGCAGC----
----AGCAGCTGCT
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CATCAGCAGC----
--NNAGCAGCTGCT
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CATCAGCAGC---
---CAGCAGCTGN
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CATCAGCAGC-
ADGGYAGYAGCATCT
 A C G T A C G T A C G T A C G T G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T

OSR1/MA1542.1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CATCAGCAGC-
-NACAGTAGCN
 G T A C G C T A A C G T A G T C C T G A A C T G A G T C C G T A A C T G A G T C A C G T
A C G T G T C A T C G A G A T C T C G A A C T G C G A T C T G A C T A G A G T C C T G A