Information for 4-GAGCTGCGCC (Motif 4)

A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
Reverse Opposite:
C T A G T A C G T A G C C T A G G A T C C T G A C A T G A T G C A C G T T A G C
p-value:1e-5
log p-value:-1.309e+01
Information Content per bp:1.660
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif10.00%
Number of Background Sequences with motif180.1
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets498.4 +/- 261.3bp
Average Position of motif in Background661.9 +/- 351.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH2/MA1529.1/Jaspar

Match Rank:1
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------GAGCTGCGCC--
GGGCCGCAGCTGCGTCCC
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C A C G T A C G T
C T A G C A T G C T A G G A T C T G A C C A T G A G T C C T G A A T C G T A G C A G C T A T C G G A T C C A T G A G C T G T A C G T A C G A T C

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCGCC
CGCAGCTGCG--
 A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCGCC--
NNGCNCTGCGCGGC
 A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C A C G T A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCGCC
NNCAGCTGNN--
 A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
A T G C T A C G A T G C T C G A A T C G T A G C A G C T T C A G A T G C T A C G A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GAGCTGCGCC----
--GCTCCGCCCMCY
 A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GAGCTGCGCC--
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTGCGCC
DGCAGCTGCYSS
 A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

MYOG/MA0500.2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GAGCTGCGCC
CAGCAGCTGCTG-
 A C G T A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G A C G T

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGCTGCGCC
--GCTCCG--
 A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGCTGCGCC
AGCAGCTGCTNN
 A C G T A C G T A T C G T G C A T A C G G T A C G A C T C T A G G A T C A T C G A T G C G A T C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C