Information for 6-CAGCSGGGCT (Motif 6)

A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
Reverse Opposite:
C G T A A C T G A T G C A G T C A G T C T A G C A C T G A G T C C G A T A C T G
p-value:1e-4
log p-value:-1.020e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif21.28%
Number of Background Sequences with motif2051.7
Percentage of Background Sequences with motif4.48%
Average Position of motif in Targets502.3 +/- 294.5bp
Average Position of motif in Background575.5 +/- 361.5bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic1::Zic2/MA1628.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CAGCSGGGCT
CACAGCAGGGG-
 A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
T A G C T C G A A G T C T G C A T A C G A G T C T C G A A T C G A C T G T A C G T C A G A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CAGCSGGGCT
DCTCAGCAGG---
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGCSGGGCT
CHCAGCRGGRGG
 A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CAGCSGGGCT
NAACAGCTGG---
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAGCSGGGCT--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

BHLHE22(var.2)/MA1635.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGCSGGGCT
CGCAGCTGCG--
 A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
A T G C T A C G A G T C T C G A A T C G T A G C A G C T T A C G A T G C T A C G A C G T A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CAGCSGGGCT
AACAGATGGC--
 A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGCSGGGCT
NAHCAGCTGD---
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T A C G T A C G T

ZNF449/MA1656.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGCSGGGCT---
NNGGTTGGGCTTNN
 A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T A C G T A C G T A C G T
A T G C C A G T C A T G A C T G G A C T C G A T C A T G A C T G A T C G A G T C C G A T A C G T A C T G C A T G

NEUROD1/MA1109.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAGCSGGGCT
GGACAGATGGCAG
 A C G T A C G T A C G T A G T C C G T A A C T G G T A C A T C G A C T G A C T G A T C G A G T C A C G T
C A T G T C A G T C G A T G A C C G T A A C T G T G C A G C A T C A T G A C T G A G T C T C G A T A C G