Information for 5-CATATTTTAA (Motif 5)

A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
Reverse Opposite:
C A G T A C G T T C G A G T C A G T C A C G T A A C G T C T G A C G A T T A C G
p-value:1e-5
log p-value:-1.212e+01
Information Content per bp:1.823
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif23.40%
Number of Background Sequences with motif2039.3
Percentage of Background Sequences with motif4.45%
Average Position of motif in Targets422.3 +/- 255.2bp
Average Position of motif in Background440.9 +/- 368.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Atoh1/MA0461.2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
ANCATATGTT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
AACATATGTT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
ANCATATGGT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
GACATATGTT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CATATTTTAA
NAACATATGTTT-
 A C G T A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
ACCATATGGT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATATTTTAA
ACCATATGTT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
ANCATATGGT--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T A C G T

PB0174.1_Sox30_2/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CATATTTTAA-----
NCGTATTATAATCNTA
 A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

NEUROG1/MA0623.2/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATATTTTAA
GACATATGTC--
 A C G T A C G T A T G C C G T A A G C T T G C A C G A T A C G T A C G T A G C T C G T A G T C A
T C A G T G C A A G T C C T G A A G C T C T G A A G C T A T C G A C G T A G T C A C G T A C G T