Information for 2-AATGGTAGTA (Motif 2)

C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
Reverse Opposite:
A C G T C G T A G A T C G C A T G T C A T A G C A G T C C G T A G C A T C G A T
p-value:1e-6
log p-value:-1.438e+01
Information Content per bp:1.689
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif34.04%
Number of Background Sequences with motif3771.6
Percentage of Background Sequences with motif8.24%
Average Position of motif in Targets440.5 +/- 246.0bp
Average Position of motif in Background479.2 +/- 318.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SOX21/MA0866.1/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AATGGTAGTA--
AACAATGGTAGTGTT
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A A C G T A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Isl1/MA1608.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AATGGTAGTA
NNCTAATGGNN---
 A C G T A C G T A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T A C G T

Sox1/MA0870.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATGGTAGTA--
AACAATGNTATTGTT
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A A C G T A C G T
T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AATGGTAGTA
GGGAATTGTAGT-
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

SOX2/MA0143.4/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AATGGTAGTA
AAACAATGGAA---
 A C G T A C G T A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T A C G T A C G T

BARX2/MA1471.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGGTAGTA
NTAATGGTTTTN
 A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGGTAGTA
GTAATCDGATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AATGGTAGTA
YTAATYNRATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AATGGTAGTA--
TATGCWAATBAV
 C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A A C G T A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATGGTAGTA
NTAATBNAATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A T C G C A G T C G T A C T A G G C A T T G C A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A