Information for 2-TGAATATTTT (Motif 2)

C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
Reverse Opposite:
C G T A C T G A C G T A C G T A A C G T T G C A A C G T A G C T A T G C C G T A
p-value:1e-7
log p-value:-1.712e+01
Information Content per bp:1.883
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif34.78%
Number of Background Sequences with motif3070.5
Percentage of Background Sequences with motif6.91%
Average Position of motif in Targets502.8 +/- 265.3bp
Average Position of motif in Background477.4 +/- 365.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGAATATTTT
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TGAATATTTT
NNTNNCAATATTAG
 A C G T A C G T A C G T A C G T C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGAATATTTT
ATGAATATTC-
 A C G T C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGAATATTTT
--AATAATT-
 C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T

MEF2A/MA0052.4/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGAATATTTT-----
NNTCTATTTTTAGNN
 C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C A G T G A T C G A C T C G T A G C A T G C A T G C A T G C A T G C A T C T G A C T A G G T C A G C T A

PB0197.1_Zfp105_2/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TGAATATTTT--
ATGGTTCAATAATTTTG
 A C G T A C G T A C G T A C G T A C G T C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T A C G T A C G T
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGAATATTTT----
--KCTATTTTTRGH
 C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGAATATTTT
ATGMATATDC-
 A C G T C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TGAATATTTT---
---CTATTTTTGG
 C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

MEF2C/MA0497.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TGAATATTTT------
-TTCTATTTTTAGNNN
 C G A T A T C G C T G A C G T A A C G T C G T A A C G T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T