Information for 4-CCTTTTTAAA (Motif 4)

G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A
Reverse Opposite:
G A C T C G A T A C G T C G T A G C T A C G T A C T G A C G T A C A T G C T A G
p-value:1e-4
log p-value:-1.148e+01
Information Content per bp:1.566
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif26.09%
Number of Background Sequences with motif2642.9
Percentage of Background Sequences with motif5.88%
Average Position of motif in Targets405.5 +/- 260.1bp
Average Position of motif in Background477.2 +/- 363.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:CCTTTTTAAA--
---ATTTGAATT
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CCTTTTTAAA----
----TTTGAAACCG
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTTTAAA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PRDM4/MA1647.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCTTTTTAAA
GTCTGTTTCTA
 A C G T G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A
C T A G C A G T T A G C C G A T T C A G G C A T A G C T G C A T G T A C G C A T G C T A

LBX1/MA0618.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCTTTTTAAA
-CTAATTAA-
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTTTTTAAA--
CBTGTTTAYAWW
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T A C G T
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T

Foxo1/MA0480.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CCTTTTTAAA
TCCTGTTTACA
 A C G T G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A
C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A

Foxf1/MA1606.1/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTTTTTAAA-
NNTGTTTACAN
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T
G C A T G A C T C G A T T C A G G A C T C G A T C G A T G T C A A G T C G C T A G C A T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCTTTTTAAA---
-NTGTTTAYATWW
 G A T C G T A C G C A T G A C T G C A T C G A T G C A T T G C A G C T A C T G A A C G T A C G T A C G T
A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A