Information for 3-GASCTAACCC (Motif 3)

T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C
Reverse Opposite:
A C T G A C T G C T A G A C G T A C G T C G T A A C T G A T C G A C G T A G T C
p-value:1e-5
log p-value:-1.338e+01
Information Content per bp:1.846
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif26.09%
Number of Background Sequences with motif2193.3
Percentage of Background Sequences with motif4.88%
Average Position of motif in Targets442.2 +/- 254.1bp
Average Position of motif in Background488.7 +/- 340.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.79
Offset:2
Orientation:forward strand
Alignment:GASCTAACCC
--GCTAATCC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PITX1/MA0682.2/Jaspar

Match Rank:2
Score:0.77
Offset:3
Orientation:forward strand
Alignment:GASCTAACCC-
---CTAATCCC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T
A C G T A C G T A C G T G A T C A C G T C G T A C G T A A C G T G T A C A G T C G T A C

OTX2/MA0712.2/Jaspar

Match Rank:3
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GASCTAACCC---
-NNCTAATCCCNN
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T A C G T A C G T
A C G T G C A T G C A T G A T C G C A T C G T A G T C A C A G T G A T C G A T C G A T C G C A T C G A T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GASCTAACCC-
--CTTAATCCC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T
A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GASCTAACCC--
--GCTAATCCCC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.75
Offset:2
Orientation:forward strand
Alignment:GASCTAACCC--
--NYTAATCCYB
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T A C G T
A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:forward strand
Alignment:GASCTAACCC--
--CCTAATCCGC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T A C G T
A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:8
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GASCTAACCC-
---YTAATCCY
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T
A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.73
Offset:4
Orientation:forward strand
Alignment:GASCTAACCC--
----TAATCCCN
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PITX2/MA1547.1/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GASCTAACCC-
---ATAATCCC
 T C A G C G T A T A G C A G T C C G A T C G T A C G T A G A T C A G T C A G T C A C G T
A C G T A C G T A C G T G T C A C G A T C T G A C G T A A C G T A G T C A G T C T G A C