Information for 2-CGAGCTTCGG (Motif 2)

A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
Reverse Opposite:
A G T C G T A C A T C G T C G A C G T A A C T G G T A C A C G T A G T C A C T G
p-value:1e-8
log p-value:-1.844e+01
Information Content per bp:1.884
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif15.22%
Number of Background Sequences with motif257.5
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets491.1 +/- 285.2bp
Average Position of motif in Background645.8 +/- 260.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OSR2/MA1646.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGAGCTTCGG---
-NNGCTTCTGTNN
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G A C G T A C G T A C G T
A C G T A G T C C A G T T C A G G A T C A G C T G C A T A T G C G A C T A T C G A C G T C A G T C A G T

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CGAGCTTCGG
---GCTTCC-
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

IRF6/MA1509.1/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGAGCTTCGG-
--AGTTTCGGT
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G A C G T
A C G T A C G T C T G A A T C G G A C T G C A T C G A T G A T C T A C G C T A G A G C T

Nr2e3/MA0164.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGAGCTTCGG
CAAGCTT---
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T

HNF4A(var.2)/MA1494.1/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCTTCGG----
NTGACCTTTGGACCC
 A C G T A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G A C G T A C G T A C G T A C G T
C A T G G A C T T C A G T G C A G T A C G T A C A G C T G C A T A G C T C T A G C T A G G T C A G T A C A G T C A G T C

ZNF135/MA1587.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGAGCTTCGG-
CCTCGACCTCCTGA
 A C G T A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G A C G T
A G T C A G T C A G C T A G T C T C A G C T G A T A G C A G T C A G C T A T G C G A T C G A C T T C A G C T G A

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:CGAGCTTCGG
---GCTCCG-
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGAGCTTCGG
-CAGCC----
 A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CGAGCTTCGG--
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCTTCGG
ATGACCTTGA-
 A C G T A G T C A C T G C G T A A C T G A G T C A C G T A G C T A T G C A C T G A C T G
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T