Information for 4-CCGA (Motif 8)

A G T C A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C T G
p-value:1e0
log p-value:-6.156e-01
Information Content per bp:1.530
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif74.47%
Number of Background Sequences with motif33430.8
Percentage of Background Sequences with motif73.88%
Average Position of motif in Targets580.0 +/- 265.0bp
Average Position of motif in Background603.7 +/- 356.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)3.41
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF6/MA1509.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CCGA----
ACCGAAACT
 A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
T C G A G A T C A T G C C T A G C G T A C G T A C T G A A T G C G A C T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCGA-------
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0115.1_Ehf_2/Jaspar

Match Rank:3
Score:0.65
Offset:-8
Orientation:forward strand
Alignment:--------CCGA----
TAGTATTTCCGATCTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T
C G A T C G T A T C A G C A G T C T G A A C G T C G A T C G A T G A T C G A T C A C T G G C T A G C A T T A G C C G A T G C A T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCGA--
GAGSCCGAGC
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CCGA-------
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

SOX12/MA1561.1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCGA------
ACCGAACAATG
 A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G T A C G A T C C A T G T G C A T C G A A G T C C G T A T G C A G A C T T A C G

PB0035.1_Irf5_1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCGA------
ATAAACCGAAACCAA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T C T G A C G T A C T G A G A T C G A T C C T A G C T G A C G T A C G T A T A G C G A T C C T G A T C G A

PB0139.1_Irf5_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGA-------
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0036.1_Irf6_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CCGA---------
CTGATCGAAACCAAAGT
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C C G A T C A T G C T G A G A C T G A T C C T A G T C G A C G T A C G T A T A G C A G T C T C G A T G C A C G T A C A T G C G A T

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCGA-
NRYTTCCGGY
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C T G C G T A A C G T
G A T C C T G A A G T C C G A T C G A T G A T C A G T C A C T G A T C G A G C T