Information for 1-AATGGTAGTA (Motif 1)

C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
Reverse Opposite:
C A G T C G T A G A T C G C A T G T C A T G A C G A T C C G T A G C A T C G A T
p-value:1e-10
log p-value:-2.323e+01
Information Content per bp:1.683
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif46.81%
Number of Background Sequences with motif4452.5
Percentage of Background Sequences with motif9.78%
Average Position of motif in Targets348.5 +/- 249.4bp
Average Position of motif in Background477.5 +/- 315.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AATGGTAGTA
GGGAATTGTAGT-
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AATGGTAGTA--
AACAATGGTAGTGTT
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A A C G T A C G T
C T G A T C G A A T G C T C G A T C G A C A G T C A T G C A T G G A C T T C G A C A T G C G A T C T A G C A G T A G C T

Isl1/MA1608.1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AATGGTAGTA
NNCTAATGGNN---
 A C G T A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
A C G T T C A G G A T C C G A T C T G A C G T A G A C T C A T G C T A G T G C A G A C T A C G T A C G T A C G T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATGGTAGTA
GTAATCDGATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

SOX2/MA0143.4/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AATGGTAGTA
AAACAATGGAA---
 A C G T A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A A C G T A C G T A C G T

BARX2/MA1471.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATGGTAGTA
NTAATGGTTTTN
 A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
A T C G G C A T C T G A G T C A A G C T A C T G C T A G A C G T G C A T C G A T G C A T G A C T

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AATGGTAGTA
YTAATYNRATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------AATGGTAGTA
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AATGGTAGTA
NTAATBNAATTA
 A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

PB0064.1_Sox14_1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AATGGTAGTA---
GCTAATTATAATTATC
 A C G T A C G T A C G T C G T A C G T A C G A T C T A G A C T G C A G T C G T A C T A G G A C T G T C A A C G T A C G T A C G T
C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C