Information for 3-AGCAACCTAA (Motif 3)

C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
Reverse Opposite:
G A C T A C G T C G T A A T C G A T C G C G A T A C G T A C T G A G T C A C G T
p-value:1e-7
log p-value:-1.704e+01
Information Content per bp:1.856
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif16.00%
Number of Background Sequences with motif448.1
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets500.8 +/- 198.1bp
Average Position of motif in Background526.5 +/- 306.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX7/MA1554.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--AGCAACCTAA
NTAGCAACG---
 A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
C T G A G A C T T C G A T A C G G A T C C T G A C T G A A T G C T A C G A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------AGCAACCTAA
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AGCAACCTAA
TACCATAGCAACGGT-
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-10
Orientation:forward strand
Alignment:----------AGCAACCTAA---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

SIX1/MA1118.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGCAACCTAA--
-GTAACCTGATA
 C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A A C G T A C G T
A C G T C A T G C G A T G C T A C G T A G A T C G T A C G C A T C T A G C G T A A C G T G T C A

RFX1/MA0509.2/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------AGCAACCTAA
TNCCATAGCAACNN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
G A C T C A T G A G T C G A T C G T C A G A C T T C G A C T A G G A T C C T G A T C G A G A T C G T C A T C A G A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AGCAACCTAA
SCCTAGCAACAG--
 A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.60
Offset:-8
Orientation:forward strand
Alignment:--------AGCAACCTAA
TGTTKCCTAGCAACM---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T A C G T

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGCAACCTAA---
ACATGCTACCTAATAC
 A C G T A C G T A C G T C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

RUNX3/MA0684.2/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCAACCTAA---
-AAAACCTCAAAT
 C G T A C T A G A G T C C G T A C G T A A T G C T A G C A C G T G T C A C T G A A C G T A C G T A C G T
A C G T C G T A G C T A T C G A C T G A G A T C T G A C C G A T T G A C G C T A C T G A G C T A G A C T