Information for 6-TTTAKGAGGA (Motif 6)

A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T A G T C G T C A A C G T C G T A C G T A C G T A
p-value:1e-6
log p-value:-1.482e+01
Information Content per bp:1.840
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif32.65%
Number of Background Sequences with motif3432.3
Percentage of Background Sequences with motif7.59%
Average Position of motif in Targets353.9 +/- 277.4bp
Average Position of motif in Background468.3 +/- 301.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTTAKGAGGA--
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTTAKGAGGA
TTTTATKRGG-
 A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----TTTAKGAGGA--
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTAKGAGGA
NTTTTACGAGN-
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TTTAKGAGGA
TTTTATTRGN-
 A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C A C G T

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TTTAKGAGGA
NTTTTATDRG--
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTAKGAGGA
DGWTTTATGRCN-
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTAKGAGGA
NTTTTACGAC--
 A C G T A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T A C G T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTAKGAGGA-
NTTTCTNAGAAA
 A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A A C G T
C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTTAKGAGGA
TTTTATGGCB-
 A C G T A C G T A C G T A C G T G T C A A C G T T C A G C G T A A C T G T C A G C G T A
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C A C G T