Information for 2-ATGATAGCCT (Motif 2)

C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G G T A C C G A T C T G A A C G T G T A C C G T A A C G T
p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.870
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif16.33%
Number of Background Sequences with motif393.4
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets290.4 +/- 251.3bp
Average Position of motif in Background453.2 +/- 313.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0166.1_Six6_2/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
AATNTTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

PH0161.1_Six1/Jaspar

Match Rank:2
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANNNATGATACCCCATC
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
G T C A T G C A C G T A G T C A C T G A G A C T C A T G C G T A A G C T G T C A A G T C A T G C A G T C A G T C G C T A C G A T G A T C

PB0059.1_Six6_1/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANANNTGATACCCNATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

Six3/MA0631.1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0163.1_Six3/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANANGTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
T G C A C G A T G C A T C G T A C T A G A C G T C A T G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A T C

PH0165.1_Six6_1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANANNTGATACCCTATN
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0162.1_Six2/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----ATGATAGCCT---
ANANGTGATACCCCATT
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
G T C A C T G A C G T A G T A C C T A G A G C T C A T G C G T A A G C T G T C A A G T C T G A C A G T C A G T C G T C A C G A T G A C T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ATGATAGCCT-
AAGATATCCTT
 C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T
G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T

PH0164.1_Six4/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----ATGATAGCCT---
ATAAATGACACCTATCA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

JUND(var.2)/MA0492.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ATGATAGCCT----
NATGACATCATCNNN
 A C G T C G T A A C G T A C T G C G T A G A C T C G T A A C T G A G T C G T A C A C G T A C G T A C G T A C G T A C G T
A C T G T C G A A C G T A C T G C T G A A G T C T C G A A C G T G T A C C G T A A G C T A G T C G C A T G A C T G C A T