Information for 9-CCYTTTMAGA (Motif 9)

A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A
Reverse Opposite:
A C G T A G T C A C G T A C T G C G T A C G T A C T G A C T A G A C T G C T A G
p-value:1e-5
log p-value:-1.289e+01
Information Content per bp:1.865
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.00%
Number of Background Sequences with motif1058.0
Percentage of Background Sequences with motif2.37%
Average Position of motif in Targets607.8 +/- 297.2bp
Average Position of motif in Background539.8 +/- 322.0bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-Box(TBP)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CCYTTTMAGA---
-CCTTTTATAGNC
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCYTTTMAGA
CGGTTTCAAA
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCYTTTMAGA-
-CCTTTGATST
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T
A C G T A T G C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T

HLTF/MA0109.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCYTTTMAGA
AACCTTATAT--
 A C G T A C G T A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A
C G T A G C T A G T A C A G T C C G A T A C G T C G T A A C G T T C G A G A C T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CCYTTTMAGA-
-CCTTTGATGT
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

BARHL2/MA0635.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCYTTTMAGA
ANCGTTTANN-
 A C G T A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCYTTTMAGA
CCYMATAAAA
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PB0184.1_Tbp_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCYTTTMAGA----
CCGATTTAAGCGACC
 A C G T A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T A C G T A C G T A C G T
T G A C A T G C A T C G C G T A G A C T C G A T C G A T G T C A G C T A A T C G T A G C A C T G G C T A A C G T G T A C

HOXC9/MA0485.2/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCYTTTMAGA-
-NTTTTACGAC
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T
A C G T C T G A C G A T A C G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXB9/MA1503.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCYTTTMAGA-
-NTTTTACGAC
 A G T C A G T C A G T C A G C T A C G T A C G T G T A C C G T A C T A G G T C A A C G T
A C G T C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C