Information for 2-TCGTTTAACG (Motif 2)

A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
Reverse Opposite:
T G A C T A C G C A G T A C G T G C T A G T C A C G T A G A T C C T A G T G C A
p-value:1e-9
log p-value:-2.085e+01
Information Content per bp:1.714
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif36.00%
Number of Background Sequences with motif2866.4
Percentage of Background Sequences with motif6.42%
Average Position of motif in Targets464.0 +/- 222.0bp
Average Position of motif in Background489.0 +/- 302.1bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARHL2/MA0635.1/Jaspar

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTTAACG
ANCGTTTANN-
 A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
C T G A A G T C G A T C C T A G G C A T A C G T C G A T C G T A C T A G A T G C A C G T

BARHL1/MA0877.2/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TCGTTTAACG
NCGTTTAN--
 A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
G T A C G A T C C T A G G C A T A C G T G C A T C G T A A T C G A C G T A C G T

MYBL2/MA0777.1/Jaspar

Match Rank:3
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TCGTTTAACG---
AACCGTTAAACGGTC
 A C G T A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G A C G T A C G T A C G T
C T G A C T G A T G A C T A G C C T A G C A G T A G C T C G T A T G C A G C T A T G A C A T C G A T C G G A C T G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TCGTTTAACG
GGTCGTAAAAT-
 A C G T A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TCGTTTAACG
GGTCGTAAAATT
 A C G T A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TCGTTTAACG
GTCGTAAAAT-
 A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCGTTTAACG
GTCGTAAAAA-
 A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

HOXB9/MA1503.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TCGTTTAACG
GTCGTAAAAT-
 A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
T C A G A G C T A G T C T C A G A C G T G C T A C G T A G T C A G C T A G A C T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TCGTTTAACG
AGTCGTAAAAA-
 A C G T A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A A C G T

HOXC9/MA0485.2/Jaspar

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TCGTTTAACG
GTCGTAAAAT-
 A C G T A C G T A G T C C T A G A C G T A C G T C G A T C G T A G T C A A T G C A C T G
T C A G A G C T A G T C C T A G A C G T C G T A C G T A G T C A G C T A G A C T A C G T