Information for 5-CTCGTTGACC (Motif 5)

A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G G C A T G T A C C G T A G T C A A T G C A C T G C G T A A C T G
p-value:1e-7
log p-value:-1.704e+01
Information Content per bp:1.878
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif14.29%
Number of Background Sequences with motif297.2
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets510.3 +/- 210.1bp
Average Position of motif in Background639.5 +/- 288.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXRA::VDR/MA0074.1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CTCGTTGACC-
TGAACCCGATGACCC
 A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:2
Score:0.68
Offset:-7
Orientation:reverse strand
Alignment:-------CTCGTTGACC---
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

NR4A2::RXRA/MA1147.1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTCGTTGACC--
GAGGTCATTGACCCC
 A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
T C A G T C G A C A T G C A T G A G C T A G T C T C G A C G A T A G C T T A C G T G C A G T A C G T A C A G T C A G T C

NFYB/MA0502.2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCGTTGACC--
CTCATTGGCCAG
 A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
A T G C A G C T A T G C G C T A A G C T C A G T C A T G C T A G A G T C G A T C T G C A T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CTCGTTGACC-
-----TGACCT
 A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

NR1H4::RXRA/MA1146.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTCGTTGACC--
GAGGTCATTGACCTT
 A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
T C A G T C G A C T A G C A T G A C G T A G T C C T G A G C A T A G C T T C A G T G C A G T A C G T A C A G C T A G C T

NR2F1(var.3)/MA1538.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTCGTTGACC--
AAGGTCATTGACCTT
 A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T
C T G A C T G A A C T G C T A G A C G T A G T C T C G A A C G T A G C T T C A G G T C A A G T C T G A C G A C T G A C T

RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCGTTGACC-
TGACCTTGACCT
 A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CTCGTTGACC
NNAATTCTCGNTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C
A T C G T A C G C T G A C T G A G A C T G A C T T A G C A G C T A G T C C A T G C T A G G C A T G A T C C G T A T C G A A C G T

NR2C1/MA1535.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CTCGTTGACC---
----NTGACCTCN
 A G T C A C G T A G T C A T C G A C G T A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A G C T A T C G G T C A A G T C G T A C A G C T G A T C C A T G