Information for 2-CCAGGTCACT (Motif 2)

A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
Reverse Opposite:
C T G A T C A G A C G T C T A G G T C A A T G C T A G C A C G T A C T G A T C G
p-value:1e-9
log p-value:-2.079e+01
Information Content per bp:1.839
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif22.00%
Number of Background Sequences with motif770.6
Percentage of Background Sequences with motif1.74%
Average Position of motif in Targets517.6 +/- 273.5bp
Average Position of motif in Background506.2 +/- 284.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CREB3L4/MA1474.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CCAGGTCACT
TGCCACGTCACC
 A C G T A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
A G C T C A T G G T A C G T A C T C G A A G T C T C A G A G C T T A G C T C G A A G T C A T G C

NR4A2/MA0160.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CCAGGTCACT
-AAGGTCAC-
 A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGTCACT
TCAAGGTCAN-
 A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CCAGGTCACT
ATCAAGGTCA--
 A C G T A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

ESRRA/MA0592.3/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCAGGTCACT
GCTCAAGGTCACA
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
C A T G A G T C G A C T T A G C C T G A T C G A C A T G C A T G C G A T A G T C C T G A G A T C T C G A

CREB3/MA0638.1/Jaspar

Match Rank:6
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CCAGGTCACT-
GTGCCACGTCATCA
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T A C G T
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCAGGTCACT
--AGGTCA--
 A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCAGGTCACT
TRAGGTCA--
 A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer

Match Rank:9
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGTCACT
NBYCAAGGTCAC-
 A C G T A C G T A C G T A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T
A T C G A T G C A G C T T A G C T C G A C T G A C T A G A C T G C A G T A T G C C T G A G T A C A C G T

NR1H4/MA1110.1/Jaspar

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCAGGTCACT--
-NAGGTCATTGA
 A T G C A G T C C G T A A T C G A T C G C A G T A G T C C G T A A G T C A G C T A C G T A C G T
A C G T C G A T T C G A C A T G C A T G A C G T G A T C T C G A A G C T G C A T T C A G T G C A