Information for 4-TGCASCAGCC (Motif 4)

C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C
Reverse Opposite:
A T C G A T C G T A G C A G C T T A C G A T C G C G A T A T C G A G T C G C T A
p-value:1e-5
log p-value:-1.205e+01
Information Content per bp:1.612
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.37%
Number of Background Sequences with motif1216.0
Percentage of Background Sequences with motif2.69%
Average Position of motif in Targets585.6 +/- 279.0bp
Average Position of motif in Background570.5 +/- 308.7bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TGCASCAGCC--
CAGCACCTGCCCC
 A C G T C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T A C G T
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

TCF4/MA0830.2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TGCASCAGCC--
CGGCACCTGCCCC
 A C G T C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T A C G T
A T G C C A T G T A C G T A G C T C G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TGCASCAGCC--
DGCAGCTGCYSS
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T A C G T
C T G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G T C G A T C A T G C A T G C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGCASCAGCC-
CGCACCTGCCG
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G

TCF3/MA0522.3/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGCASCAGCC-
CGCACCTGCCC
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TGCASCAGCC-
SNGCACCTGCHS
 A C G T C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

ASCL1/MA1100.2/Jaspar

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TGCASCAGCC
NGCAGCTGCN
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C
T C A G T C A G G A T C G T C A A T C G T A G C C G A T C T A G A G T C A G T C

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:TGCASCAGCC
TRCACCTGCY
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C
A G C T T C G A G T A C T C G A A T G C A T G C G C A T A T C G A G T C A G C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TGCASCAGCC
-----CAGCC
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

SNAI1/MA1558.1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCASCAGCC
NGCACCTGCN
 C G A T T C A G T A G C G C T A T A G C A T G C T C G A A T C G T A G C T A G C
G A C T T C A G G A T C G T C A G A T C A G T C C G A T C A T G G A T C G A T C