Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 49)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44812)	% of Background Sequences with Motif
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.656e+00	0.5660	21.0	42.86%	10132.1	22.61%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-6.521e+00	0.5660	21.0	42.86%	10234.1	22.83%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-2	-6.400e+00	0.5660	28.0	57.14%	15933.5	35.55%
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-5.503e+00	0.5660	10.0	20.41%	3495.8	7.80%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e-2	-5.314e+00	0.5660	4.0	8.16%	625.7	1.40%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-2	-5.192e+00	0.5660	17.0	34.69%	8328.6	18.58%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-4.417e+00	0.7585	28.0	57.14%	17998.9	40.16%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e-1	-4.091e+00	0.9198	21.0	42.86%	12452.2	27.78%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-4.083e+00	0.9198	8.0	16.33%	3047.2	6.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.856e+00	0.9303	34.0	69.39%	24232.9	54.07%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e-1	-3.738e+00	0.9517	23.0	46.94%	14516.2	32.39%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.628e+00	0.9739	44.0	89.80%	34927.8	77.93%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-3.557e+00	0.9739	24.0	48.98%	15594.9	34.80%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e-1	-3.550e+00	0.9739	27.0	55.10%	18214.0	40.64%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.510e+00	0.9739	22.0	44.90%	13961.7	31.15%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-3.510e+00	0.9739	5.0	10.20%	1595.9	3.56%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e-1	-3.494e+00	0.9739	18.0	36.73%	10713.9	23.90%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.348e+00	0.9739	7.0	14.29%	2860.6	6.38%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.338e+00	0.9739	6.0	12.24%	2252.6	5.03%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.337e+00	0.9739	12.0	24.49%	6289.8	14.03%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.273e+00	0.9739	32.0	65.31%	23158.8	51.67%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-3.260e+00	0.9739	26.0	53.06%	17732.8	39.57%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.247e+00	0.9739	5.0	10.20%	1714.3	3.82%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.224e+00	0.9739	7.0	14.29%	2938.3	6.56%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-3.180e+00	0.9739	6.0	12.24%	2340.8	5.22%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-3.166e+00	0.9739	19.0	38.78%	11916.8	26.59%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.147e+00	0.9739	14.0	28.57%	7976.8	17.80%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-3.083e+00	0.9739	21.0	42.86%	13682.0	30.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.062e+00	0.9739	5.0	10.20%	1805.6	4.03%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e-1	-3.048e+00	0.9739	15.0	30.61%	8860.2	19.77%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.002e+00	0.9739	9.0	18.37%	4443.4	9.91%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.988e+00	0.9739	15.0	30.61%	8929.8	19.92%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.958e+00	0.9739	2.0	4.08%	334.0	0.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.945e+00	0.9739	12.0	24.49%	6675.0	14.89%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.945e+00	0.9739	10.0	20.41%	5203.9	11.61%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e-1	-2.898e+00	0.9739	31.0	63.27%	22799.6	50.87%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.868e+00	0.9739	30.0	61.22%	21923.8	48.92%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.865e+00	0.9739	11.0	22.45%	6011.8	13.41%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.851e+00	0.9739	18.0	36.73%	11508.8	25.68%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.800e+00	0.9739	17.0	34.69%	10761.2	24.01%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e-1	-2.788e+00	0.9739	35.0	71.43%	26764.8	59.72%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.753e+00	0.9739	27.0	55.10%	19384.5	43.25%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e-1	-2.746e+00	0.9739	21.0	42.86%	14160.8	31.60%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.744e+00	0.9739	15.0	30.61%	9225.9	20.58%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.729e+00	0.9739	33.0	67.35%	24947.1	55.66%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.711e+00	0.9739	30.0	61.22%	22178.0	49.48%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.710e+00	0.9739	26.0	53.06%	18561.8	41.42%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.681e+00	0.9739	15.0	30.61%	9306.0	20.76%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.649e+00	0.9739	21.0	42.86%	14306.8	31.92%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e-1	-2.631e+00	0.9739	25.0	51.02%	17803.9	39.72%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.621e+00	0.9739	9.0	18.37%	4784.6	10.68%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-2.616e+00	0.9739	24.0	48.98%	16948.9	37.82%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-2.609e+00	0.9739	10.0	20.41%	5530.5	12.34%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.594e+00	0.9739	25.0	51.02%	17862.1	39.85%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-2.559e+00	0.9739	19.0	38.78%	12751.7	28.45%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-2.536e+00	0.9739	15.0	30.61%	9496.6	21.19%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.535e+00	0.9739	16.0	32.65%	10306.1	22.99%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.497e+00	0.9739	8.0	16.33%	4179.1	9.32%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-2.486e+00	0.9739	17.0	34.69%	11195.4	24.98%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e-1	-2.462e+00	0.9739	6.0	12.24%	2813.6	6.28%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e-1	-2.456e+00	0.9739	22.0	44.90%	15467.3	34.51%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-2.431e+00	0.9739	26.0	53.06%	19024.1	42.45%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.431e+00	0.9739	19.0	38.78%	12946.3	28.89%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.379e+00	0.9739	8.0	16.33%	4290.9	9.57%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-2.349e+00	0.9739	25.0	51.02%	18276.9	40.78%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.302e+00	0.9739	13.0	26.53%	8207.8	18.31%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-2.289e+00	0.9739	27.0	55.10%	20173.4	45.01%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.276e+00	0.9739	24.0	48.98%	17519.8	39.09%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.254e+00	0.9739	15.0	30.61%	9891.7	22.07%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.189e+00	0.9739	13.0	26.53%	8362.9	18.66%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.180e+00	0.9739	6.0	12.24%	3041.5	6.79%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.141e+00	0.9739	4.0	8.16%	1715.8	3.83%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.108e+00	0.9739	5.0	10.20%	2405.4	5.37%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.103e+00	0.9739	25.0	51.02%	18723.5	41.78%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.087e+00	0.9739	17.0	34.69%	11813.1	26.36%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.085e+00	0.9739	6.0	12.24%	3124.6	6.97%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.072e+00	0.9739	1.0	2.04%	122.7	0.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.057e+00	0.9739	12.0	24.49%	7745.2	17.28%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-2.047e+00	0.9739	12.0	24.49%	7759.7	17.31%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.039e+00	0.9739	9.0	18.37%	5407.4	12.07%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.034e+00	0.9739	27.0	55.10%	20651.8	46.08%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.025e+00	0.9739	39.0	79.59%	32000.5	71.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.007e+00	0.9739	8.0	16.33%	4679.4	10.44%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.003e+00	0.9739	28.0	57.14%	21621.5	48.24%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.000e+00	0.9739	11.0	22.45%	7025.9	15.68%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-2.000e+00	0.9739	16.0	32.65%	11118.0	24.81%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.994e+00	0.9739	5.0	10.20%	2496.7	5.57%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.994e+00	0.9739	16.0	32.65%	11127.3	24.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.964e+00	0.9739	15.0	30.61%	10341.1	23.07%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.937e+00	0.9739	13.0	26.53%	8732.5	19.48%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.936e+00	0.9739	12.0	24.49%	7920.1	17.67%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.928e+00	0.9739	18.0	36.73%	12935.2	28.86%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.908e+00	0.9739	18.0	36.73%	12972.5	28.94%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.888e+00	0.9739	7.0	14.29%	4056.8	9.05%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.883e+00	0.9739	11.0	22.45%	7190.3	16.04%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.872e+00	0.9739	5.0	10.20%	2601.6	5.80%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.870e+00	0.9739	3.0	6.12%	1240.1	2.77%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.866e+00	0.9739	12.0	24.49%	8024.8	17.91%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.866e+00	0.9739	23.0	46.94%	17405.9	38.84%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.864e+00	0.9739	5.0	10.20%	2608.7	5.82%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.857e+00	0.9739	17.0	34.69%	12210.4	27.24%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.849e+00	0.9739	13.0	26.53%	8871.3	19.79%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-1.812e+00	0.9739	8.0	16.33%	4911.6	10.96%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.797e+00	0.9739	4.0	8.16%	1959.0	4.37%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.796e+00	0.9739	12.0	24.49%	8133.7	18.15%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.768e+00	0.9739	12.0	24.49%	8178.2	18.25%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.753e+00	0.9739	12.0	24.49%	8202.9	18.30%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.748e+00	0.9739	3.0	6.12%	1316.6	2.94%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.730e+00	0.9739	6.0	12.24%	3475.3	7.75%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.722e+00	0.9739	7.0	14.29%	4247.4	9.48%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.720e+00	0.9739	33.0	67.35%	26835.9	59.88%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.710e+00	0.9739	10.0	20.41%	6637.3	14.81%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.697e+00	0.9739	28.0	57.14%	22260.2	49.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.645e+00	0.9739	29.0	59.18%	23290.2	51.97%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.597e+00	0.9739	19.0	38.78%	14443.7	32.23%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.585e+00	0.9739	27.0	55.10%	21601.9	48.20%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.577e+00	0.9739	8.0	16.33%	5223.6	11.65%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.577e+00	0.9739	19.0	38.78%	14487.1	32.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.564e+00	0.9739	29.0	59.18%	23475.7	52.38%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.545e+00	0.9739	17.0	34.69%	12814.1	28.59%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.540e+00	0.9739	25.0	51.02%	19894.5	44.39%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.510e+00	0.9739	11.0	22.45%	7782.0	17.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.498e+00	0.9739	5.0	10.20%	2972.0	6.63%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.498e+00	0.9739	7.0	14.29%	4535.7	10.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.496e+00	0.9739	10.0	20.41%	6975.5	15.56%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-1.472e+00	0.9739	16.0	32.65%	12102.1	27.00%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.471e+00	0.9739	26.0	53.06%	20960.6	46.77%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.469e+00	0.9739	8.0	16.33%	5380.1	12.00%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.454e+00	0.9739	42.0	85.71%	36068.4	80.48%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.453e+00	0.9739	15.0	30.61%	11280.5	25.17%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.447e+00	0.9739	5.0	10.20%	3029.8	6.76%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.443e+00	0.9739	31.0	63.27%	25605.1	57.13%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.441e+00	0.9739	13.0	26.53%	9594.0	21.41%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.437e+00	0.9739	14.0	28.57%	10454.0	23.33%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.432e+00	0.9739	6.0	12.24%	3830.5	8.55%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-1.431e+00	0.9739	18.0	36.73%	13930.6	31.08%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.430e+00	0.9739	33.0	67.35%	27496.4	61.35%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.419e+00	0.9739	22.0	44.90%	17493.5	39.03%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.414e+00	0.9739	16.0	32.65%	12226.7	27.28%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.405e+00	0.9739	17.0	34.69%	13115.2	29.26%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.396e+00	0.9739	15.0	30.61%	11399.2	25.43%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.378e+00	0.9739	1.0	2.04%	264.7	0.59%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-1.374e+00	0.9739	16.0	32.65%	12314.7	27.48%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.372e+00	0.9739	25.0	51.02%	20300.5	45.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.357e+00	0.9739	5.0	10.20%	3136.4	7.00%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.357e+00	0.9739	28.0	57.14%	23062.5	51.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.348e+00	0.9739	17.0	34.69%	13245.4	29.55%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-1.340e+00	0.9739	6.0	12.24%	3953.2	8.82%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.339e+00	0.9739	26.0	53.06%	21287.7	47.50%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.338e+00	0.9739	17.0	34.69%	13268.9	29.61%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.332e+00	0.9739	23.0	46.94%	18601.0	41.50%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.327e+00	0.9739	14.0	28.57%	10684.9	23.84%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.322e+00	0.9739	8.0	16.33%	5612.8	12.52%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.291e+00	0.9739	15.0	30.61%	11631.1	25.95%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.290e+00	0.9739	8.0	16.33%	5667.5	12.65%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-1.284e+00	0.9739	12.0	24.49%	9056.9	20.21%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.279e+00	0.9739	17.0	34.69%	13407.4	29.91%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.267e+00	0.9739	17.0	34.69%	13435.5	29.98%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.264e+00	0.9739	4.0	8.16%	2463.2	5.50%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.263e+00	0.9739	32.0	65.31%	26986.7	60.21%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.242e+00	0.9739	17.0	34.69%	13495.4	30.11%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.216e+00	0.9739	17.0	34.69%	13561.3	30.26%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.214e+00	0.9739	32.0	65.31%	27117.1	60.50%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.214e+00	0.9739	32.0	65.31%	27118.5	60.51%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.208e+00	0.9739	22.0	44.90%	18025.3	40.22%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-1.196e+00	0.9739	26.0	53.06%	21667.6	48.34%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.181e+00	0.9739	28.0	57.14%	23530.7	52.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.178e+00	0.9739	20.0	40.82%	16317.2	36.41%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.164e+00	0.9739	3.0	6.12%	1792.9	4.00%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.150e+00	0.9739	25.0	51.02%	20889.7	46.61%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.150e+00	0.9739	13.0	26.53%	10215.0	22.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.150e+00	0.9739	7.0	14.29%	5072.6	11.32%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.138e+00	0.9739	16.0	32.65%	12874.8	28.73%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.136e+00	0.9739	2.0	4.08%	1054.1	2.35%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.131e+00	0.9739	18.0	36.73%	14663.9	32.72%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.131e+00	0.9739	6.0	12.24%	4268.9	9.52%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.131e+00	0.9739	6.0	12.24%	4268.6	9.52%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.121e+00	0.9739	18.0	36.73%	14689.4	32.78%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.114e+00	0.9739	3.0	6.12%	1845.3	4.12%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.109e+00	0.9739	4.0	8.16%	2652.2	5.92%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.095e+00	0.9739	12.0	24.49%	9473.6	21.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.094e+00	0.9739	14.0	28.57%	11226.1	25.05%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.090e+00	0.9739	13.0	26.53%	10359.6	23.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.078e+00	0.9739	2.0	4.08%	1102.6	2.46%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.062e+00	0.9739	20.0	40.82%	16638.6	37.12%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.055e+00	0.9739	21.0	42.86%	17557.9	39.18%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.043e+00	0.9739	19.0	38.78%	15798.7	35.25%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.015e+00	0.9739	32.0	65.31%	27681.9	61.76%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.010e+00	0.9739	7.0	14.29%	5331.3	11.90%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.991e-01	0.9739	2.0	4.08%	1172.5	2.62%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.799e-01	0.9739	11.0	22.45%	8876.5	19.81%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-9.775e-01	0.9739	5.0	10.20%	3681.5	8.21%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-9.703e-01	0.9739	10.0	20.41%	8022.3	17.90%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-9.698e-01	0.9739	6.0	12.24%	4549.5	10.15%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-9.499e-01	0.9739	3.0	6.12%	2039.9	4.55%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.447e-01	0.9739	18.0	36.73%	15194.3	33.90%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-9.224e-01	0.9739	21.0	42.86%	17962.7	40.08%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-9.216e-01	0.9739	12.0	24.49%	9910.5	22.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.177e-01	0.9739	5.0	10.20%	3785.5	8.45%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-9.135e-01	0.9739	15.0	30.61%	12603.7	28.12%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-9.025e-01	0.9739	33.0	67.35%	28950.8	64.60%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-8.953e-01	0.9739	7.0	14.29%	5567.1	12.42%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-8.720e-01	0.9739	30.0	61.22%	26303.2	58.69%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.635e-01	0.9739	5.0	10.20%	3885.0	8.67%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-8.596e-01	0.9739	1.0	2.04%	500.4	1.12%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-8.582e-01	0.9739	8.0	16.33%	6532.9	14.58%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-8.571e-01	0.9739	31.0	63.27%	27267.9	60.84%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.439e-01	0.9739	4.0	8.16%	3050.4	6.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-8.421e-01	0.9739	10.0	20.41%	8348.0	18.63%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-8.251e-01	0.9739	17.0	34.69%	14675.4	32.74%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-8.237e-01	0.9739	19.0	38.78%	16484.6	36.78%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.231e-01	0.9739	2.0	4.08%	1356.3	3.03%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.231e-01	0.9739	2.0	4.08%	1356.3	3.03%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.148e-01	0.9739	3.0	6.12%	2228.8	4.97%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-8.144e-01	0.9739	23.0	46.94%	20136.2	44.93%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-7.998e-01	0.9739	9.0	18.37%	7570.5	16.89%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.857e-01	0.9739	2.0	4.08%	1401.6	3.13%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-7.818e-01	0.9739	11.0	22.45%	9414.7	21.01%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.612e-01	0.9739	9.0	18.37%	7676.6	17.13%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.359e-01	0.9739	2.0	4.08%	1465.5	3.27%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.352e-01	0.9739	39.0	79.59%	34990.7	78.07%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.301e-01	0.9739	4.0	8.16%	3260.7	7.28%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.012e-01	0.9787	6.0	12.24%	5130.8	11.45%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.881e-01	0.9871	9.0	18.37%	7890.3	17.60%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.878e-01	0.9871	3.0	6.12%	2438.7	5.44%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.763e-01	0.9900	19.0	38.78%	17024.8	37.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.762e-01	0.9900	7.0	14.29%	6105.4	13.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.596e-01	0.9978	2.0	4.08%	1573.1	3.51%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-6.589e-01	0.9978	12.0	24.49%	10718.2	23.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.469e-01	1.0000	8.0	16.33%	7104.9	15.85%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.466e-01	1.0000	9.0	18.37%	8020.7	17.90%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.443e-01	1.0000	12.0	24.49%	10770.4	24.03%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-6.373e-01	1.0000	9.0	18.37%	8050.3	17.96%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.330e-01	1.0000	2.0	4.08%	1614.1	3.60%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.286e-01	1.0000	2.0	4.08%	1621.7	3.62%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-6.283e-01	1.0000	12.0	24.49%	10828.0	24.16%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.280e-01	1.0000	2.0	4.08%	1622.3	3.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.244e-01	1.0000	8.0	16.33%	7174.4	16.01%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.238e-01	1.0000	4.0	8.16%	3487.8	7.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.143e-01	1.0000	23.0	46.94%	20919.8	46.68%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.126e-01	1.0000	12.0	24.49%	10886.1	24.29%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-6.016e-01	1.0000	18.0	36.73%	16419.7	36.64%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-5.962e-01	1.0000	4.0	8.16%	3552.7	7.93%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.884e-01	1.0000	16.0	32.65%	14647.6	32.68%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-5.831e-01	1.0000	8.0	16.33%	7309.0	16.31%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-5.804e-01	1.0000	21.0	42.86%	19248.5	42.95%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.698e-01	1.0000	9.0	18.37%	8280.5	18.48%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.619e-01	1.0000	1.0	2.04%	765.5	1.71%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-5.571e-01	1.0000	5.0	10.20%	4592.6	10.25%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.484e-01	1.0000	5.0	10.20%	4617.9	10.30%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.416e-01	1.0000	15.0	30.61%	13931.7	31.08%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-5.319e-01	1.0000	22.0	44.90%	20384.0	45.48%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-5.310e-01	1.0000	24.0	48.98%	22209.7	49.55%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-5.305e-01	1.0000	8.0	16.33%	7491.0	16.71%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-5.255e-01	1.0000	16.0	32.65%	14923.2	33.30%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.245e-01	1.0000	7.0	14.29%	6575.5	14.67%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.185e-01	1.0000	8.0	16.33%	7535.3	16.81%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-5.117e-01	1.0000	9.0	18.37%	8497.3	18.96%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.082e-01	1.0000	4.0	8.16%	3780.0	8.43%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-5.066e-01	1.0000	10.0	20.41%	9452.9	21.09%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-5.044e-01	1.0000	11.0	22.45%	10393.2	23.19%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.019e-01	1.0000	2.0	4.08%	1848.9	4.13%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.011e-01	1.0000	1.0	2.04%	844.0	1.88%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-4.859e-01	1.0000	28.0	57.14%	26056.8	58.14%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.855e-01	1.0000	4.0	8.16%	3845.2	8.58%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.582e-01	1.0000	3.0	6.12%	2943.6	6.57%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-4.488e-01	1.0000	4.0	8.16%	3956.9	8.83%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.368e-01	1.0000	10.0	20.41%	9755.4	21.77%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.301e-01	1.0000	7.0	14.29%	6931.7	15.47%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.181e-01	1.0000	6.0	12.24%	6015.5	13.42%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.158e-01	1.0000	1.0	2.04%	975.1	2.18%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.120e-01	1.0000	12.0	24.49%	11760.2	26.24%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.119e-01	1.0000	10.0	20.41%	9874.0	22.03%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-4.040e-01	1.0000	2.0	4.08%	2070.7	4.62%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-3.948e-01	1.0000	8.0	16.33%	8046.9	17.95%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.934e-01	1.0000	4.0	8.16%	4141.4	9.24%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.862e-01	1.0000	13.0	26.53%	12837.2	28.64%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-3.845e-01	1.0000	1.0	2.04%	1032.0	2.30%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-3.793e-01	1.0000	1.0	2.04%	1042.6	2.33%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-3.786e-01	1.0000	10.0	20.41%	10040.9	22.40%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.697e-01	1.0000	11.0	22.45%	11039.2	24.63%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.680e-01	1.0000	5.0	10.20%	5236.0	11.68%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-3.605e-01	1.0000	10.0	20.41%	10136.6	22.62%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.472e-01	1.0000	4.0	8.16%	4315.9	9.63%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.423e-01	1.0000	1.0	2.04%	1118.9	2.50%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-3.422e-01	1.0000	2.0	4.08%	2241.5	5.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.401e-01	1.0000	17.0	34.69%	16852.2	37.60%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.393e-01	1.0000	16.0	32.65%	15926.4	35.54%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-3.377e-01	1.0000	35.0	71.43%	33092.4	73.84%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-3.230e-01	1.0000	10.0	20.41%	10348.6	23.09%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.173e-01	1.0000	4.0	8.16%	4439.6	9.91%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.105e-01	1.0000	12.0	24.49%	12342.4	27.54%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-3.091e-01	1.0000	13.0	26.53%	13302.6	29.68%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.918e-01	1.0000	8.0	16.33%	8588.6	19.16%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.906e-01	1.0000	2.0	4.08%	2410.6	5.38%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-2.906e-01	1.0000	30.0	61.22%	29002.2	64.71%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.896e-01	1.0000	31.0	63.27%	29892.4	66.70%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.823e-01	1.0000	7.0	14.29%	7654.4	17.08%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.785e-01	1.0000	19.0	38.78%	19141.7	42.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.761e-01	1.0000	2.0	4.08%	2463.6	5.50%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.735e-01	1.0000	14.0	28.57%	14499.7	32.35%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.727e-01	1.0000	1.0	2.04%	1291.5	2.88%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-2.607e-01	1.0000	4.0	8.16%	4707.3	10.50%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.581e-01	1.0000	5.0	10.20%	5766.2	12.87%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.580e-01	1.0000	12.0	24.49%	12706.7	28.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.557e-01	1.0000	22.0	44.90%	22080.5	49.27%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.504e-01	1.0000	5.0	10.20%	5810.3	12.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.501e-01	1.0000	17.0	34.69%	17508.0	39.06%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.447e-01	1.0000	2.0	4.08%	2588.2	5.77%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.413e-01	1.0000	5.0	10.20%	5864.8	13.09%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-2.394e-01	1.0000	6.0	12.24%	6909.4	15.42%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-2.352e-01	1.0000	23.0	46.94%	23165.5	51.69%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.276e-01	1.0000	3.0	6.12%	3800.1	8.48%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-2.240e-01	1.0000	18.0	36.73%	18665.1	41.65%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.209e-01	1.0000	2.0	4.08%	2694.3	6.01%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.205e-01	1.0000	3.0	6.12%	3838.2	8.56%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.203e-01	1.0000	1.0	2.04%	1458.4	3.25%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-2.170e-01	1.0000	3.0	6.12%	3857.7	8.61%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.143e-01	1.0000	1.0	2.04%	1480.6	3.30%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-2.112e-01	1.0000	14.0	28.57%	15009.4	33.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.100e-01	1.0000	1.0	2.04%	1496.0	3.34%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.025e-01	1.0000	1.0	2.04%	1526.0	3.40%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.946e-01	1.0000	2.0	4.08%	2825.7	6.30%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.940e-01	1.0000	6.0	12.24%	7230.0	16.13%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-1.921e-01	1.0000	5.0	10.20%	6192.0	13.82%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-1.882e-01	1.0000	17.0	34.69%	18074.5	40.33%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.832e-01	1.0000	6.0	12.24%	7316.7	16.32%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.824e-01	1.0000	1.0	2.04%	1609.8	3.59%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.819e-01	1.0000	2.0	4.08%	2895.4	6.46%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-1.716e-01	1.0000	9.0	18.37%	10494.5	23.42%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.614e-01	1.0000	16.0	32.65%	17422.8	38.87%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.573e-01	1.0000	3.0	6.12%	4240.1	9.46%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.571e-01	1.0000	17.0	34.69%	18417.7	41.09%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.553e-01	1.0000	1.0	2.04%	1739.4	3.88%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.550e-01	1.0000	10.0	20.41%	11667.3	26.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.547e-01	1.0000	4.0	8.16%	5397.8	12.04%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.534e-01	1.0000	22.0	44.90%	23091.3	51.52%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.530e-01	1.0000	4.0	8.16%	5411.3	12.07%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.508e-01	1.0000	14.0	28.57%	15636.6	34.89%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-1.489e-01	1.0000	12.0	24.49%	13716.0	30.60%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.461e-01	1.0000	8.0	16.33%	9739.3	21.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.431e-01	1.0000	7.0	14.29%	8735.6	19.49%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.399e-01	1.0000	5.0	10.20%	6634.9	14.80%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.387e-01	1.0000	1.0	2.04%	1831.2	4.09%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.382e-01	1.0000	5.0	10.20%	6651.3	14.84%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.333e-01	1.0000	18.0	36.73%	19657.2	43.86%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-1.275e-01	1.0000	13.0	26.53%	14963.9	33.39%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-1.188e-01	1.0000	18.0	36.73%	19864.4	44.32%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-1.138e-01	1.0000	10.0	20.41%	12177.4	27.17%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.065e-01	1.0000	4.0	8.16%	5871.1	13.10%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.894e-02	1.0000	4.0	8.16%	5963.2	13.31%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.724e-02	1.0000	1.0	2.04%	2124.2	4.74%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-9.424e-02	1.0000	1.0	2.04%	2150.7	4.80%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.341e-02	1.0000	6.0	12.24%	8284.9	18.49%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.023e-02	1.0000	3.0	6.12%	4883.5	10.90%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.885e-02	1.0000	1.0	2.04%	2199.6	4.91%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.580e-02	1.0000	3.0	6.12%	4940.5	11.02%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-8.165e-02	1.0000	5.0	10.20%	7352.2	16.40%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-8.077e-02	1.0000	2.0	4.08%	3724.1	8.31%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-7.770e-02	1.0000	9.0	18.37%	11742.3	26.20%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-7.570e-02	1.0000	21.0	42.86%	23404.0	52.22%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-7.462e-02	1.0000	9.0	18.37%	11802.3	26.33%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-7.062e-02	1.0000	2.0	4.08%	3859.7	8.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.346e-02	1.0000	11.0	22.45%	14098.9	31.46%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.204e-02	1.0000	14.0	28.57%	17118.5	38.19%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-5.242e-02	1.0000	4.0	8.16%	6730.1	15.02%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.824e-02	1.0000	1.0	2.04%	2710.1	6.05%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.512e-02	1.0000	1.0	2.04%	2766.1	6.17%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-3.847e-02	1.0000	9.0	18.37%	12740.6	28.43%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-3.621e-02	1.0000	6.0	12.24%	9526.2	21.25%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.492e-02	1.0000	2.0	4.08%	4555.4	10.16%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-3.399e-02	1.0000	7.0	14.29%	10733.1	23.95%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.364e-02	1.0000	4.0	8.16%	7242.3	16.16%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.190e-02	1.0000	4.0	8.16%	7302.8	16.29%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-3.049e-02	1.0000	1.0	2.04%	3096.0	6.91%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.946e-02	1.0000	2.0	4.08%	4720.2	10.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.555e-02	1.0000	8.0	16.33%	12200.6	27.22%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.553e-02	1.0000	10.0	20.41%	14343.1	32.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.425e-02	1.0000	2.0	4.08%	4907.3	10.95%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-2.295e-02	1.0000	15.0	30.61%	19525.3	43.56%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-2.088e-02	1.0000	2.0	4.08%	5050.4	11.27%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.954e-02	1.0000	1.0	2.04%	3468.6	7.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.904e-02	1.0000	2.0	4.08%	5138.1	11.46%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.617e-02	1.0000	3.0	6.12%	6728.4	15.01%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-1.563e-02	1.0000	24.0	48.98%	28265.4	63.07%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.511e-02	1.0000	6.0	12.24%	10571.5	23.59%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.476e-02	1.0000	1.0	2.04%	3702.9	8.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.306e-02	1.0000	1.0	2.04%	3804.9	8.49%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.189e-02	1.0000	2.0	4.08%	5580.1	12.45%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.715e-03	1.0000	2.0	4.08%	5867.1	13.09%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.022e-03	1.0000	6.0	12.24%	11423.5	25.49%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.445e-03	1.0000	1.0	2.04%	4901.8	10.94%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-2.296e-03	1.0000	2.0	4.08%	7060.7	15.75%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	-0.000e+00	1.0000	0.0	0.00%	36.7	0.08%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-0.000e+00	1.0000	0.0	0.00%	1336.7	2.98%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-0.000e+00	1.0000	0.0	0.00%	194.3	0.43%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-0.000e+00	1.0000	0.0	0.00%	838.2	1.87%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-0.000e+00	1.0000	0.0	0.00%	20.6	0.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1131.2	2.52%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-0.000e+00	1.0000	0.0	0.00%	2772.4	6.19%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	0.0	0.00%	465.4	1.04%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	147.4	0.33%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	-0.000e+00	1.0000	0.0	0.00%	413.4	0.92%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	0.0	0.00%	1626.4	3.63%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	472.0	1.05%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	363.3	0.81%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	0.000e+00	1.0000	0.0	0.00%	1198.1	2.67%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	1472.6	3.29%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1047.4	2.34%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	299.4	0.67%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	1731.0	3.86%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	0.0	0.00%	486.8	1.09%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	127.8	0.29%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	515.8	1.15%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	1086.1	2.42%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	1072.2	2.39%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	0.000e+00	1.0000	0.0	0.00%	933.3	2.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	43.2	0.10%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	2814.3	6.28%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	731.9	1.63%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	207.3	0.46%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	522.4	1.17%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	1965.7	4.39%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	157.1	0.35%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	153.4	0.34%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	896.0	2.00%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	482.6	1.08%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1427.8	3.19%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	1221.1	2.72%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	550.2	1.23%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	1230.6	2.75%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	819.0	1.83%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	819.0	1.83%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1408.3	3.14%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	433.6	0.97%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	850.0	1.90%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	174.0	0.39%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	534.4	1.19%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	0.000e+00	1.0000	0.0	0.00%	1893.1	4.22%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	0.000e+00	1.0000	0.0	0.00%	1293.0	2.88%