Information for 3-TGCACCAGCC (Motif 3)

G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C
Reverse Opposite:
A T C G A C T G A T G C A G C T A C T G A T C G C G A T A C T G A G T C C T G A
p-value:1e-6
log p-value:-1.590e+01
Information Content per bp:1.853
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.37%
Number of Background Sequences with motif752.6
Percentage of Background Sequences with motif1.68%
Average Position of motif in Targets494.4 +/- 327.3bp
Average Position of motif in Background550.9 +/- 332.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TGCACCAGCC--
CAGCACCTGCCCC
 A C G T G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T A C G T
A T G C C G T A T A C G A T G C C T G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

TCF4/MA0830.2/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGCACCAGCC--
CGGCACCTGCCCC
 A C G T G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T A C G T
A T G C C A T G T A C G T A G C T C G A A T G C T A G C A G C T T A C G A T G C G A T C A T G C A T G C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TGCACCAGCC-
SNGCACCTGCHS
 A C G T G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TGCACCAGCC
TRCACCTGCY
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C
A G C T T C G A G T A C T C G A A T G C A T G C G C A T A T C G A G T C A G C T

SNAI1/MA1558.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCACCAGCC
NGCACCTGCN
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C
G A C T T C A G G A T C G T C A G A T C A G T C C G A T C A T G G A T C G A T C

TCF3/MA0522.3/Jaspar

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACCAGCC-
CGCACCTGCCC
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T
T A G C T A C G A T G C T C G A A T G C T A G C A G C T T C A G A G T C T A G C A T G C

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:TGCACCAGCC-
CGCACCTGCCG
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T
T A G C T A C G A G T C T C G A A T G C T A G C A G C T T C A G A G T C A G T C A T C G

SNAI3/MA1559.1/Jaspar

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGCACCAGCC
TGCACCTGTT
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C
A G C T T C A G G A T C T G C A A T G C G A T C G A C T C T A G G A C T G A C T

ZEB1/MA0103.3/Jaspar

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TGCACCAGCC-
CCCACCTGCGC
 G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T
A T G C A T G C A G T C C T G A A G T C T A G C A G C T T C A G A T G C T A C G A T G C

SNAI2/MA0745.2/Jaspar

Match Rank:10
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TGCACCAGCC--
ATGCACCTGTCAT
 A C G T G A C T A C T G A G T C C G T A A T G C G T A C T C G A A T C G A G T C A T G C A C G T A C G T
T C G A A G C T T C A G G A T C C T G A A T G C A T G C A G C T T A C G A G C T G T A C T C G A A G C T