Information for 1-TTTAAATGGC (Motif 1)

A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
Reverse Opposite:
T C A G G T A C A G T C G T C A A C G T A C G T C G A T C G T A C G T A C G T A
p-value:1e-8
log p-value:-1.934e+01
Information Content per bp:1.856
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif24.49%
Number of Background Sequences with motif1170.6
Percentage of Background Sequences with motif2.61%
Average Position of motif in Targets414.9 +/- 275.3bp
Average Position of motif in Background491.9 +/- 338.9bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TTTAAATGGC
TTTAATTGCN
 A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TTTAAATGGC
ATTTGAATT--
 A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGGC---
AAATTCAAGTGGNTTN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C A C G T A C G T A C G T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGGC----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGGC
GNCTATAAAAGG-
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTAAATGGC
-TTAAGTGGT
 A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

PH0115.1_Nkx2-6/Jaspar

Match Rank:7
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TTTAAATGGC---
AATNTTAAGTGGNTNN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C A C G T A C G T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

BARHL2/MA0635.1/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTTAAATGGC
GCTAAACGGT
 A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAATGGC--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTAAATGGC
TTTTATTRGN
 A C G T A C G T C G A T C G T A C G T A G T C A C A G T A C T G A C T G A G T C
C G A T A C G T A C G T G C A T C G T A G A C T C A G T C T A G A T C G G A T C