Information for 3-TAACAATGCH (Motif 3)

G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
Reverse Opposite:
C A T G A C T G G T A C G T C A A C G T C G A T C T A G A G C T G C A T C T G A
p-value:1e-6
log p-value:-1.607e+01
Information Content per bp:1.763
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif21.74%
Number of Background Sequences with motif1048.4
Percentage of Background Sequences with motif2.36%
Average Position of motif in Targets461.1 +/- 254.0bp
Average Position of motif in Background477.4 +/- 393.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TAACAATGCH
NAACAAT---
 G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T

SRY/MA0084.1/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TAACAATGCH
GTAAACAAT---
 A C G T A C G T G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T A C G T

SOX13/MA1120.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TAACAATGCH-
AAACAATGGCA
 G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C A C G T
C T G A T C G A C T G A A G T C G C T A C T G A G C A T C T A G T C A G T G A C G C T A

SOX2/MA0143.4/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:TAACAATGCH-
AAACAATGGAA
 G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C A C G T
C G T A C G T A G C T A G A T C G C T A T C G A C G A T C T A G C T A G C G T A G C T A

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TAACAATGCH
-AACAAT---
 G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T

SOX18/MA1563.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:TAACAATGCH
-CACAATGC-
 G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
A C G T T A G C C T G A A G T C T C G A T G C A A G C T C T A G T A G C A C G T

SOX8/MA0868.2/Jaspar

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TAACAATGCH
AGAACAATGG-
 A C G T G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
T G C A C T A G C T G A C G T A A G T C C G T A G T C A G C A T C T A G T A C G A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TAACAATGCH
NNCNNAACAATTNT
 A C G T A C G T A C G T A C G T G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0067.1_Sox18_1/Jaspar

Match Rank:9
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----TAACAATGCH-
NNTNANAACAATTNNA
 A C G T A C G T A C G T A C G T A C G T G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C A C G T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TAACAATGCH---
TNCNNAACAATTTTTNC
 A C G T A C G T A C G T A C G T G A C T C G T A C T G A G A T C G C T A C G T A A C G T C A T G A G T C G T A C A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C