Information for 3-ACGT (Motif 12)

C G T A A G T C A C T G A C G T
Reverse Opposite:
C G T A A G T C A C T G A C G T
p-value:1e0
log p-value:-1.124e+00
Information Content per bp:1.530
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif60.87%
Number of Background Sequences with motif25058.6
Percentage of Background Sequences with motif56.42%
Average Position of motif in Targets577.9 +/- 307.4bp
Average Position of motif in Background564.0 +/- 372.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.86
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:1
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---ACGT-
BGCACGTA
 A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

GMEB2/MA0862.1/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--ACGT--
TTACGTAA
 A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T C T G A A T G C A C T G A G C T G T C A T G C A

HIF1A/MA1106.1/Jaspar

Match Rank:3
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----ACGT--
NNGCACGTNC
 A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
T A C G T A C G C A T G A G T C T C G A A G T C C T A G G A C T T C G A A T G C

Arnt/MA0004.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-ACGT-
CACGTG
 A C G T C G T A A G T C A C T G A C G T A C G T
G T A C C T G A A G T C A C T G A C G T A C T G

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--ACGT--
GCACGTNC
 A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.83
Offset:-4
Orientation:reverse strand
Alignment:----ACGT--
GGGTACGTGC
 A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--ACGT--
RTACGTGC
 A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-ACGT---
CACGTGBN
 A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A

Gmeb1/MA0615.1/Jaspar

Match Rank:9
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------ACGT-------
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G

PB0027.1_Gmeb1_1/Jaspar

Match Rank:10
Score:0.81
Offset:-6
Orientation:forward strand
Alignment:------ACGT-------
GAGTGTACGTAAGATGG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T C A A C T G A C G T C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T A C G C G T A A G C T T C A G A T C G