Information for 4-TTTAACASCC (Motif 4)

A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C
Reverse Opposite:
A C T G A C T G T A C G A C G T A T C G A G C T A C G T C G T A C G T A C G T A
p-value:1e-6
log p-value:-1.535e+01
Information Content per bp:1.858
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif16.67%
Number of Background Sequences with motif581.6
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets489.5 +/- 216.5bp
Average Position of motif in Background478.8 +/- 323.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0013.1_Eomes_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACASCC----
NNTTTTCACACCTTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T A C G T A C G T A C G T
C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTTAACASCC
ATTAACACCT
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTAACASCC-
-TTMACACCTT
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T
A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T

TBX2/MA0688.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTAACASCC-
TTTCACACCTN
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T
G C A T G C A T G A C T T G A C C T G A G A T C T C G A T A G C A G T C G A C T G C A T

Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer

Match Rank:5
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTTAACASCC
TTTCACACCT
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C
A C G T G C A T G A C T T A G C C G T A G A T C C G T A T G A C G A T C G A C T

TBR1/MA0802.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TTTAACASCC
TTTCACACCT
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C
C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACASCC----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTAACASCC----
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T A C G T A C G T A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T

Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTTAACASCC-
-TTVACACCTH
 A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T
A C G T A C G T G A C T T C A G C T G A G T A C C T G A T A G C A G T C G A C T G A T C

PH0067.1_Hoxc12/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTTAACASCC--
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C C G T A A T G C A G T C A G T C A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A