Information for 3-CTCAGCGGAG (Motif 3)

A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T G T A C A G T C T C A G A G T C C A G T T A C G C T G A A C T G
p-value:1e-7
log p-value:-1.677e+01
Information Content per bp:1.838
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif27.08%
Number of Background Sequences with motif1832.9
Percentage of Background Sequences with motif4.13%
Average Position of motif in Targets581.9 +/- 238.6bp
Average Position of motif in Background589.4 +/- 300.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CTCAGCGGAG--
CHCAGCRGGRGG
 A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T
T G A C G T C A A G T C G C T A C T A G A G T C C T G A C A T G A C T G C T A G T A C G T C A G

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CTCAGCGGAG-
-----CGGAGC
 A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

ZIC5/MA1584.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGAG-----
GCNCAGCGGGGGGTCN
 A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C C T G A A G T C T C G A T C A G G A T C C T A G A C T G C A T G A C T G A C T G C A T G A G C T T G A C A C T G

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGAG----
NCGCAGCGGGGGGTC
 A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTCAGCGGAG
GTCCCCAGGGGA-
 A C G T A C G T A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCAGCGGAG----
CACAGCGGGGGGTC
 A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGAG
DCTCAGCAGG-
 A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGAG----
DCHCAGCAGGRGGCC
 A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

EBF1/MA0154.4/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTCAGCGGAG-
AGTCCCCAGGGGACT
 A C G T A C G T A C G T A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T
C G T A C T A G A C G T A G T C G A T C G A T C G T A C C G T A C T A G C T A G C T A G T C A G T G C A G T A C G C A T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGAG----
NCNCAGCGGGGGGTC
 A C G T A G T C G A C T A T G C G T C A A C T G A G T C A C T G A C T G C T G A A C T G A C G T A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C