Information for 5-ACGA (Motif 12)

C G T A A G T C A C T G C G T A
Reverse Opposite:
A C G T A G T C A C T G A C G T
p-value:1e0
log p-value:-3.485e-01
Information Content per bp:1.530
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif66.67%
Number of Background Sequences with motif30683.9
Percentage of Background Sequences with motif69.14%
Average Position of motif in Targets494.9 +/- 252.5bp
Average Position of motif in Background552.3 +/- 328.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer

Match Rank:1
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----ACGA---
NHRTCACGACDN
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T
T C A G G C T A T C A G C A G T T G A C G T C A A G T C A T C G T G C A G T A C C A G T G A T C

HOXA9/MA0594.2/Jaspar

Match Rank:2
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA-
NNTTTACGAC
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T
A T G C C T A G C G A T C G A T C G A T C T G A A G T C C A T G C T G A A G T C

PB0032.1_IRC900814_1/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ACGA--------
ATTTACGACAAATAGC
 A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA--
NTTTTACGACC
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------ACGA--
ANTTTTACGACC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----ACGA--------
TTTTACGACTTTCCAT
 A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

HOXD12/MA0873.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA--
NTTTTACGACT
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

HOXB9/MA1503.1/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA-
NTTTTACGAC
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T
C T G A C G A T C A G T A C G T C G A T G T C A A G T C A C T G C T G A A G T C

HOXD11/MA0908.1/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA-
NTTTTACGAC
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T
C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ACGA--
NTTTTACGACC
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C A C T G C G T A A C G T A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C