Information for 1-CGAG (Motif 9)

A G T C A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C T G
p-value:1e0
log p-value:-1.479e+00
Information Content per bp:1.530
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif79.17%
Number of Background Sequences with motif32281.5
Percentage of Background Sequences with motif73.28%
Average Position of motif in Targets608.7 +/- 279.3bp
Average Position of motif in Background607.1 +/- 341.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)4.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CGAG------
TTGACCGAGAATTCC
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----CGAG------
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----CGAG------
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

ZBTB33/MA0527.1/Jaspar

Match Rank:4
Score:0.68
Offset:-9
Orientation:reverse strand
Alignment:---------CGAG--
NAGNTCTCGCGAGAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T
T A G C T C G A T C A G T C G A A G C T T G A C A G C T A G T C C T A G G A T C A C T G C T G A A C T G T C G A T C A G

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.65
Offset:-8
Orientation:reverse strand
Alignment:--------CGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CGAG-
NTTTTACGAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CGAG-
GAGSCCGAGC
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

GFX(?)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CGAG---
TCTCGCGAGAAT
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T
G A C T T G A C A C G T T A G C C A T G A G T C C A T G T C G A A C T G T C G A C T G A A G C T

ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------CGAG---
GGNTCTCGCGAGAAC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C G T A C G T
T A C G T C A G T G C A A G C T T G A C A G C T A G T C A C T G G A T C A C T G T C G A A C T G C T G A C T G A A T G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGAG-
GGACGTGC
 A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C