Information for 2-CATCAGCAGC (Motif 2)

T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C
Reverse Opposite:
C A T G T G A C G C A T C T A G T A G C C G A T C T A G T G C A A G C T A T C G
p-value:1e-8
log p-value:-1.921e+01
Information Content per bp:1.676
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif35.42%
Number of Background Sequences with motif2882.4
Percentage of Background Sequences with motif6.54%
Average Position of motif in Targets660.3 +/- 271.5bp
Average Position of motif in Background542.9 +/- 334.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HAND2/MA1638.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CATCAGCAGC
NNCATCTGNN--
 A C G T A C G T T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C
C T A G T G A C A G T C T C G A A G C T T G A C A G C T T A C G A C T G G A C T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CATCAGCAGC-
---CAGCTGNT
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T
A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CATCAGCAGC-----
CTCAGCAGCTGCTACTG
 A C G T A C G T T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T A C G T A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CATCAGCAGC-
-AGCAGCTGCT
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CATCAGCAGC-
NNAGCAGCTGCT
 A C G T T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CATCAGCAGC
CAGCAGCTGN
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CATCAGCAGC
TGAGTCAGCA--
 A C G T A C G T T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

MYOG/MA0500.2/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATCAGCAGC--
NNGCAGCTGCNN
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T A C G T
T A G C C T G A T C A G A G T C T C G A A C T G T G A C A G C T T C A G A G T C G A C T A T C G

TFAP4/MA0691.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CATCAGCAGC-
-ATCAGCTGTT
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T
A C G T T C G A G C A T A T G C C G T A A T C G T A G C A C G T A C T G C G A T A C G T

NRL/MA0842.2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CATCAGCAGC---
CGTCAGCANTTTT
 T A G C T C G A A C G T G A T C G C T A A T C G A G T C C G T A A C T G G T A C A C G T A C G T A C G T
G A T C T C A G A G C T G T A C C T G A A C T G A G T C C T G A G A T C C G A T G C A T G C A T G A C T