Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 49)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43926)	% of Background Sequences with Motif
Sox7(HMG)/ESC-Sox7-ChIP-Seq(GSE133899)/Homer	VVRRAACAATGG	1e-2	-6.425e+00	0.7130	11.0	22.45%	3562.4	8.11%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-6.406e+00	0.7130	22.0	44.90%	10855.4	24.72%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-5.416e+00	0.7130	14.0	28.57%	5941.1	13.53%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-5.224e+00	0.7130	31.0	63.27%	19361.0	44.10%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-2	-5.093e+00	0.7130	20.0	40.82%	10443.8	23.79%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-2	-4.936e+00	0.7130	28.0	57.14%	17051.8	38.84%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-4.834e+00	0.7130	14.0	28.57%	6342.3	14.45%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-4.577e+00	0.7130	17.0	34.69%	8666.7	19.74%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-1	-4.571e+00	0.7130	32.0	65.31%	20997.9	47.82%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-4.305e+00	0.7130	26.0	53.06%	16053.8	36.56%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-4.260e+00	0.7130	27.0	55.10%	16955.0	38.62%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-4.196e+00	0.7130	37.0	75.51%	26180.8	59.63%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-1	-4.169e+00	0.7130	27.0	55.10%	17063.7	38.86%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-4.102e+00	0.7130	19.0	38.78%	10620.8	24.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-3.976e+00	0.7130	23.0	46.94%	13940.7	31.75%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-3.927e+00	0.7130	33.0	67.35%	22713.9	51.73%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.771e+00	0.7130	32.0	65.31%	21997.7	50.10%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.729e+00	0.7130	14.0	28.57%	7241.9	16.49%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-1	-3.679e+00	0.7130	18.0	36.73%	10291.9	23.44%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.470e+00	0.7130	31.0	63.27%	21496.4	48.96%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-1	-3.343e+00	0.7404	21.0	42.86%	13068.2	29.76%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-3.320e+00	0.7404	31.0	63.27%	21707.6	49.44%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-3.219e+00	0.7653	21.0	42.86%	13226.2	30.12%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.132e+00	0.8002	13.0	26.53%	7085.1	16.14%
EBF2(EBF)/BrownAdipose-EBF2-ChIP-Seq(GSE97114)/Homer	NABTCCCWDGGGAVH	1e-1	-3.078e+00	0.8106	20.0	40.82%	12593.3	28.68%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-2.956e+00	0.8801	4.0	8.16%	1260.9	2.87%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.951e+00	0.8801	18.0	36.73%	11145.8	25.39%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.942e+00	0.8801	21.0	42.86%	13595.8	30.97%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-2.927e+00	0.8801	13.0	26.53%	7299.7	16.63%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-2.839e+00	0.8801	6.0	12.24%	2496.6	5.69%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.756e+00	0.9020	2.0	4.08%	366.5	0.83%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.730e+00	0.9020	27.0	55.10%	19025.6	43.33%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.729e+00	0.9020	8.0	16.33%	3893.4	8.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.614e+00	0.9482	29.0	59.18%	20986.9	47.80%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-2.575e+00	0.9576	13.0	26.53%	7698.2	17.53%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.550e+00	0.9576	30.0	61.22%	21991.7	50.09%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.527e+00	0.9576	26.0	53.06%	18477.8	42.09%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-2.515e+00	0.9576	11.0	22.45%	6253.1	14.24%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.501e+00	0.9576	14.0	28.57%	8563.8	19.50%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.490e+00	0.9576	18.0	36.73%	11773.4	26.82%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.480e+00	0.9576	17.0	34.69%	10976.3	25.00%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.415e+00	0.9576	19.0	38.78%	12706.8	28.94%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.405e+00	0.9576	8.0	16.33%	4178.2	9.52%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.404e+00	0.9576	33.0	67.35%	24982.5	56.90%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-2.390e+00	0.9576	9.0	18.37%	4912.9	11.19%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.348e+00	0.9576	5.0	10.20%	2183.8	4.97%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-1	-2.320e+00	0.9576	8.0	16.33%	4259.2	9.70%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-2.320e+00	0.9576	18.0	36.73%	12027.5	27.39%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.253e+00	0.9576	8.0	16.33%	4325.7	9.85%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.246e+00	0.9576	7.0	14.29%	3618.5	8.24%
ERRg(NR)/Kidney-ESRRG-ChIP-Seq(GSE104905)/Homer	GTGACCTTGRVN	1e0	-2.206e+00	0.9576	14.0	28.57%	8959.6	20.41%
WT1(Zf)/Kidney-WT1-ChIP-Seq(GSE90016)/Homer	MCTCCCMCRCAB	1e0	-2.156e+00	0.9794	16.0	32.65%	10643.0	24.24%
HOXA1(Homeobox)/mES-Hoxa1-ChIP-Seq(SRP084292)/Homer	TGATKGATGR	1e0	-2.149e+00	0.9794	6.0	12.24%	3005.2	6.84%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.147e+00	0.9794	28.0	57.14%	20907.7	47.62%
Oct11(POU,Homeobox)/NCIH1048-POU2F3-ChIP-seq(GSE115123)/Homer	GATTTGCATA	1e0	-2.144e+00	0.9794	9.0	18.37%	5175.2	11.79%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.132e+00	0.9794	1.0	2.04%	112.2	0.26%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.127e+00	0.9794	20.0	40.82%	14006.0	31.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.118e+00	0.9794	25.0	51.02%	18313.5	41.71%
Tbx21(T-box)/GM12878-TBX21-ChIP-Seq(Encode)/Homer	AGGTGTGAAA	1e0	-2.115e+00	0.9794	18.0	36.73%	12353.2	28.14%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.093e+00	0.9794	26.0	53.06%	19236.5	43.81%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.091e+00	0.9794	15.0	30.61%	9931.3	22.62%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.074e+00	0.9794	18.0	36.73%	12421.3	28.29%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.074e+00	0.9794	15.0	30.61%	9958.2	22.68%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.047e+00	0.9794	6.0	12.24%	3095.8	7.05%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.033e+00	0.9794	5.0	10.20%	2414.1	5.50%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-2.003e+00	0.9794	24.0	48.98%	17655.2	40.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-2.000e+00	0.9794	16.0	32.65%	10891.2	24.81%
FoxD3(forkhead)/ZebrafishEmbryo-Foxd3.biotin-ChIP-seq(GSE106676)/Homer	TGTTTAYTTAGC	1e0	-1.974e+00	0.9794	17.0	34.69%	11759.7	26.78%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.940e+00	0.9794	20.0	40.82%	14337.0	32.65%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.889e+00	0.9794	11.0	22.45%	7035.9	16.03%
CUX1(Homeobox)/K562-CUX1-ChIP-Seq(GSE92882)/Homer	TATCGATNAN	1e0	-1.870e+00	0.9794	14.0	28.57%	9467.9	21.56%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.866e+00	0.9794	34.0	69.39%	26911.5	61.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.851e+00	0.9794	16.0	32.65%	11141.8	25.38%
EAR2(NR)/K562-NR2F6-ChIP-Seq(Encode)/Homer	NRBCARRGGTCA	1e0	-1.838e+00	0.9794	19.0	38.78%	13677.1	31.15%
THRb(NR)/HepG2-THRb.Flag-ChIP-Seq(Encode)/Homer	GGTCACCTGAGGTCA	1e0	-1.832e+00	0.9794	11.0	22.45%	7116.5	16.21%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.828e+00	0.9794	22.0	44.90%	16261.3	37.04%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.808e+00	0.9794	41.0	83.67%	33694.3	76.74%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.779e+00	0.9794	31.0	63.27%	24336.6	55.43%
RARa(NR)/K562-RARa-ChIP-Seq(Encode)/Homer	TTGAMCTTTG	1e0	-1.765e+00	0.9794	33.0	67.35%	26193.3	59.66%
Bcl11a(Zf)/HSPC-BCL11A-ChIP-Seq(GSE104676)/Homer	TYTGACCASWRG	1e0	-1.758e+00	0.9794	11.0	22.45%	7226.7	16.46%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.753e+00	0.9794	18.0	36.73%	12991.5	29.59%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.749e+00	0.9794	4.0	8.16%	1956.5	4.46%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.730e+00	0.9794	19.0	38.78%	13882.7	31.62%
COUP-TFII(NR)/K562-NR2F1-ChIP-Seq(Encode)/Homer	GKBCARAGGTCA	1e0	-1.728e+00	0.9794	21.0	42.86%	15598.5	35.53%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.699e+00	0.9794	15.0	30.61%	10580.4	24.10%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.690e+00	0.9794	14.0	28.57%	9770.8	22.25%
GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer	CTCCCTGGGAGGCCN	1e0	-1.665e+00	0.9794	24.0	48.98%	18335.5	41.76%
HINFP(Zf)/K562-HINFP.eGFP-ChIP-Seq(Encode)/Homer	TWVGGTCCGC	1e0	-1.653e+00	0.9794	11.0	22.45%	7387.8	16.83%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.647e+00	0.9794	5.0	10.20%	2756.5	6.28%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.609e+00	0.9794	25.0	51.02%	19336.3	44.04%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.603e+00	0.9794	20.0	40.82%	14994.5	34.15%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.597e+00	0.9794	3.0	6.12%	1390.3	3.17%
ZNF652/HepG2-ZNF652.Flag-ChIP-Seq(Encode)/Homer	TTAACCCTTTVNKKN	1e0	-1.596e+00	0.9794	7.0	14.29%	4315.8	9.83%
TEAD1(TEAD)/HepG2-TEAD1-ChIP-Seq(Encode)/Homer	CYRCATTCCA	1e0	-1.571e+00	0.9794	17.0	34.69%	12501.7	28.47%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.569e+00	0.9794	19.0	38.78%	14208.5	32.36%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.556e+00	0.9794	15.0	30.61%	10846.9	24.70%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.538e+00	0.9794	3.0	6.12%	1432.0	3.26%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.512e+00	0.9897	2.0	4.08%	790.0	1.80%
Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer	GGCMATGAAA	1e0	-1.503e+00	0.9897	20.0	40.82%	15208.5	34.64%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.494e+00	0.9897	10.0	20.41%	6837.0	15.57%
PSE(SNAPc)/K562-mStart-Seq/Homer	WAVTCACCMTAASYDAAAAG	1e0	-1.472e+00	0.9997	10.0	20.41%	6873.9	15.66%
Twist2(bHLH)/Myoblast-Twist2.Ty1-ChIP-Seq(GSE127998)/Homer	MCAGCTGBYH	1e0	-1.467e+00	0.9997	22.0	44.90%	17026.7	38.78%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.460e+00	0.9997	5.0	10.20%	2953.7	6.73%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.458e+00	0.9997	8.0	16.33%	5287.1	12.04%
HIC1(Zf)/Treg-ZBTB29-ChIP-Seq(GSE99889)/Homer	TGCCAGCB	1e0	-1.445e+00	0.9997	27.0	55.10%	21484.3	48.93%
PPARa(NR),DR1/Liver-Ppara-ChIP-Seq(GSE47954)/Homer	VNAGGKCAAAGGTCA	1e0	-1.444e+00	0.9997	17.0	34.69%	12764.6	29.07%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.440e+00	0.9997	7.0	14.29%	4522.9	10.30%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.433e+00	0.9997	5.0	10.20%	2983.8	6.80%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-1.426e+00	0.9997	10.0	20.41%	6951.6	15.83%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.406e+00	0.9997	6.0	12.24%	3785.9	8.62%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.397e+00	0.9997	1.0	2.04%	253.5	0.58%
Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer	CYHATAAAAN	1e0	-1.387e+00	0.9997	34.0	69.39%	27955.7	63.67%
BHLHA15(bHLH)/NIH3T3-BHLHB8.HA-ChIP-Seq(GSE119782)/Homer	NAMCAGCTGK	1e0	-1.384e+00	0.9997	18.0	36.73%	13752.8	31.32%
DLX2(Homeobox)/BasalGanglia-Dlx2-ChIP-seq(GSE124936)/Homer	NNNTAATTAS	1e0	-1.384e+00	0.9997	26.0	53.06%	20744.5	47.25%
DLX1(Homeobox)/BasalGanglia-Dlx1-ChIP-seq(GSE124936)/Homer	NSNNTAATTA	1e0	-1.382e+00	0.9997	24.0	48.98%	18978.5	43.23%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.382e+00	0.9997	3.0	6.12%	1555.9	3.54%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.361e+00	0.9997	19.0	38.78%	14666.8	33.41%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.357e+00	0.9997	8.0	16.33%	5442.4	12.40%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.339e+00	0.9997	5.0	10.20%	3094.6	7.05%
LEF1(HMG)/H1-LEF1-ChIP-Seq(GSE64758)/Homer	CCTTTGATST	1e0	-1.330e+00	0.9997	12.0	24.49%	8779.9	20.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.319e+00	0.9997	9.0	18.37%	6317.4	14.39%
Dlx3(Homeobox)/Kerainocytes-Dlx3-ChIP-Seq(GSE89884)/Homer	NDGTAATTAC	1e0	-1.282e+00	1.0000	15.0	30.61%	11414.4	26.00%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.276e+00	1.0000	20.0	40.82%	15736.3	35.84%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.274e+00	1.0000	22.0	44.90%	17490.0	39.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.271e+00	1.0000	7.0	14.29%	4771.5	10.87%
Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer	VGCCATAAAA	1e0	-1.264e+00	1.0000	33.0	67.35%	27343.8	62.28%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.263e+00	1.0000	4.0	8.16%	2414.4	5.50%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.246e+00	1.0000	14.0	28.57%	10642.5	24.24%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.244e+00	1.0000	25.0	51.02%	20210.2	46.03%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.240e+00	1.0000	12.0	24.49%	8962.5	20.41%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.231e+00	1.0000	3.0	6.12%	1689.3	3.85%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.229e+00	1.0000	14.0	28.57%	10679.7	24.32%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.228e+00	1.0000	7.0	14.29%	4839.2	11.02%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.226e+00	1.0000	22.0	44.90%	17612.4	40.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.222e+00	1.0000	6.0	12.24%	4041.5	9.21%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.219e+00	1.0000	19.0	38.78%	15009.1	34.18%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.219e+00	1.0000	12.0	24.49%	9006.7	20.51%
Zfp57(Zf)/H1-ZFP57.HA-ChIP-Seq(GSE115387)/Homer	NANTGCSGCA	1e0	-1.218e+00	1.0000	10.0	20.41%	7330.4	16.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.210e+00	1.0000	11.0	22.45%	8182.4	18.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.209e+00	1.0000	11.0	22.45%	8184.4	18.64%
Ascl2(bHLH)/ESC-Ascl2-ChIP-Seq(GSE97712)/Homer	SSRGCAGCTGCH	1e0	-1.206e+00	1.0000	16.0	32.65%	12445.8	28.35%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.205e+00	1.0000	9.0	18.37%	6522.6	14.86%
Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer	NCYAATAAAA	1e0	-1.204e+00	1.0000	26.0	53.06%	21205.3	48.30%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.203e+00	1.0000	16.0	32.65%	12453.5	28.36%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.193e+00	1.0000	3.0	6.12%	1726.3	3.93%
Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer	TRCACCTGCY	1e0	-1.185e+00	1.0000	13.0	26.53%	9927.2	22.61%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.182e+00	1.0000	13.0	26.53%	9934.6	22.63%
TEAD3(TEA)/HepG2-TEAD3-ChIP-Seq(Encode)/Homer	TRCATTCCAG	1e0	-1.175e+00	1.0000	18.0	36.73%	14252.1	32.46%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.159e+00	1.0000	5.0	10.20%	3330.9	7.59%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.155e+00	1.0000	5.0	10.20%	3335.3	7.60%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.148e+00	1.0000	28.0	57.14%	23143.6	52.71%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.137e+00	1.0000	3.0	6.12%	1783.2	4.06%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.134e+00	1.0000	19.0	38.78%	15228.4	34.68%
MYNN(Zf)/HEK293-MYNN.eGFP-ChIP-Seq(Encode)/Homer	TTCAAAWTAAAAGTC	1e0	-1.129e+00	1.0000	6.0	12.24%	4184.9	9.53%
Phox2b(Homeobox)/CLBGA-PHOX2B-ChIP-Seq(GSE90683)/Homer	TTAATTNAATTA	1e0	-1.129e+00	1.0000	6.0	12.24%	4184.8	9.53%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.119e+00	1.0000	11.0	22.45%	8375.0	19.08%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.116e+00	1.0000	11.0	22.45%	8381.7	19.09%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.097e+00	1.0000	2.0	4.08%	1064.9	2.43%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.091e+00	1.0000	11.0	22.45%	8436.7	19.22%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.090e+00	1.0000	8.0	16.33%	5907.0	13.45%
Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer	GGYAATGAAA	1e0	-1.085e+00	1.0000	11.0	22.45%	8450.8	19.25%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.069e+00	1.0000	6.0	12.24%	4283.0	9.75%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.061e+00	1.0000	3.0	6.12%	1866.0	4.25%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.055e+00	1.0000	3.0	6.12%	1872.8	4.27%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.035e+00	1.0000	2.0	4.08%	1116.2	2.54%
Duxbl(Homeobox)/NIH3T3-Duxbl.HA-ChIP-Seq(GSE119782)/Homer	TAAYCYAATCAA	1e0	-1.033e+00	1.0000	2.0	4.08%	1118.9	2.55%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-1.032e+00	1.0000	20.0	40.82%	16384.5	37.32%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.028e+00	1.0000	14.0	28.57%	11164.3	25.43%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.027e+00	1.0000	7.0	14.29%	5189.9	11.82%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.025e+00	1.0000	16.0	32.65%	12907.8	29.40%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.006e+00	1.0000	14.0	28.57%	11220.7	25.56%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.951e-01	1.0000	4.0	8.16%	2753.6	6.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-9.899e-01	1.0000	3.0	6.12%	1948.5	4.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-9.831e-01	1.0000	16.0	32.65%	13022.7	29.66%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-9.717e-01	1.0000	12.0	24.49%	9578.3	21.82%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.688e-01	1.0000	10.0	20.41%	7862.9	17.91%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.474e-01	1.0000	22.0	44.90%	18402.2	41.91%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-9.450e-01	1.0000	1.0	2.04%	438.8	1.00%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-9.354e-01	1.0000	3.0	6.12%	2017.0	4.59%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.122e-01	1.0000	20.0	40.82%	16745.9	38.14%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.054e-01	1.0000	8.0	16.33%	6290.1	14.33%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.047e-01	1.0000	12.0	24.49%	9753.1	22.21%
Zic2(Zf)/ESC-Zic2-ChIP-Seq(SRP197560)/Homer	CHCAGCRGGRGG	1e0	-8.963e-01	1.0000	9.0	18.37%	7173.0	16.34%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.876e-01	1.0000	1.0	2.04%	472.1	1.08%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-8.869e-01	1.0000	13.0	26.53%	10674.8	24.31%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-8.833e-01	1.0000	2.0	4.08%	1262.8	2.88%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-8.813e-01	1.0000	4.0	8.16%	2926.2	6.66%
Fos(bZIP)/TSC-Fos-ChIP-Seq(GSE110950)/Homer	NDATGASTCAYN	1e0	-8.774e-01	1.0000	8.0	16.33%	6354.9	14.47%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.724e-01	1.0000	9.0	18.37%	7231.1	16.47%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.661e-01	1.0000	14.0	28.57%	11609.2	26.44%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.498e-01	1.0000	36.0	73.47%	31226.8	71.12%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.455e-01	1.0000	4.0	8.16%	2985.6	6.80%
NFE2L2(bZIP)/HepG2-NFE2L2-ChIP-Seq(Encode)/Homer	AWWWTGCTGAGTCAT	1e0	-8.426e-01	1.0000	1.0	2.04%	501.9	1.14%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.276e-01	1.0000	5.0	10.20%	3874.4	8.82%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.041e-01	1.0000	8.0	16.33%	6530.3	14.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.958e-01	1.0000	18.0	36.73%	15357.1	34.98%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.919e-01	1.0000	2.0	4.08%	1365.7	3.11%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.919e-01	1.0000	2.0	4.08%	1365.7	3.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.832e-01	1.0000	4.0	8.16%	3094.9	7.05%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.805e-01	1.0000	1.0	2.04%	545.4	1.24%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-7.802e-01	1.0000	16.0	32.65%	13640.0	31.07%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.708e-01	1.0000	27.0	55.10%	23440.1	53.39%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.587e-01	1.0000	10.0	20.41%	8408.1	19.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-7.529e-01	1.0000	4.0	8.16%	3150.1	7.17%
NFIL3(bZIP)/HepG2-NFIL3-ChIP-Seq(Encode)/Homer	VTTACGTAAYNNNNN	1e0	-7.482e-01	1.0000	12.0	24.49%	10206.5	23.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-7.435e-01	1.0000	27.0	55.10%	23540.3	53.62%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-7.418e-01	1.0000	1.0	2.04%	575.9	1.31%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.413e-01	1.0000	4.0	8.16%	3173.0	7.23%
Tcf7(HMG)/GM12878-TCF7-ChIP-Seq(Encode)/Homer	CTTTGATGTGSB	1e0	-7.365e-01	1.0000	5.0	10.20%	4060.9	9.25%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.351e-01	1.0000	25.0	51.02%	21791.6	49.63%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.246e-01	1.0000	2.0	4.08%	1450.4	3.30%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.130e-01	1.0000	17.0	34.69%	14760.9	33.62%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.110e-01	1.0000	3.0	6.12%	2348.3	5.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.079e-01	1.0000	33.0	67.35%	29017.3	66.09%
TCF4(bHLH)/SHSY5Y-TCF4-ChIP-Seq(GSE96915)/Homer	SMCATCTGKH	1e0	-7.070e-01	1.0000	17.0	34.69%	14782.8	33.67%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-7.007e-01	1.0000	19.0	38.78%	16584.9	37.77%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.994e-01	1.0000	3.0	6.12%	2368.7	5.39%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.920e-01	1.0000	7.0	14.29%	5938.0	13.52%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.857e-01	1.0000	13.0	26.53%	11299.3	25.74%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.845e-01	1.0000	2.0	4.08%	1505.8	3.43%
ZEB2(Zf)/SNU398-ZEB2-ChIP-Seq(GSE103048)/Homer	GNMCAGGTGTGC	1e0	-6.776e-01	1.0000	13.0	26.53%	11327.2	25.80%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.658e-01	1.0000	7.0	14.29%	6009.1	13.69%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-6.567e-01	1.0000	21.0	42.86%	18536.2	42.22%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.549e-01	1.0000	6.0	12.24%	5143.7	11.72%
Six4(Homeobox)/MCF7-SIX4-ChIP-Seq(Encode)/Homer	TGWAAYCTGABACCB	1e0	-6.541e-01	1.0000	1.0	2.04%	652.6	1.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.457e-01	1.0000	13.0	26.53%	11440.5	26.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.318e-01	1.0000	12.0	24.49%	10595.6	24.13%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.242e-01	1.0000	23.0	46.94%	20451.2	46.58%
Sox21(HMG)/ESC-SOX21-ChIP-Seq(GSE110505)/Homer	BCCWTTGTBYKV	1e0	-6.098e-01	1.0000	22.0	44.90%	19621.0	44.69%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.089e-01	1.0000	16.0	32.65%	14265.6	32.49%
RORa(NR)/Liver-Rora-ChIP-Seq(GSE101115)/Homer	AAWCTAGGTCARDNN	1e0	-6.004e-01	1.0000	2.0	4.08%	1633.6	3.72%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.969e-01	1.0000	14.0	28.57%	12520.2	28.52%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.965e-01	1.0000	4.0	8.16%	3479.7	7.93%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.900e-01	1.0000	39.0	79.59%	34758.3	79.17%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-5.890e-01	1.0000	15.0	30.61%	13449.6	30.63%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.823e-01	1.0000	9.0	18.37%	8068.1	18.38%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-5.789e-01	1.0000	10.0	20.41%	8985.7	20.47%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.777e-01	1.0000	31.0	63.27%	27756.3	63.22%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.767e-01	1.0000	15.0	30.61%	13499.7	30.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.734e-01	1.0000	8.0	16.33%	7191.9	16.38%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.728e-01	1.0000	9.0	18.37%	8101.8	18.45%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.513e-01	1.0000	3.0	6.12%	2658.2	6.05%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.493e-01	1.0000	32.0	65.31%	28762.5	65.51%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.440e-01	1.0000	7.0	14.29%	6376.5	14.52%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.379e-01	1.0000	17.0	34.69%	15463.2	35.22%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.354e-01	1.0000	19.0	38.78%	17269.1	39.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-5.289e-01	1.0000	8.0	16.33%	7344.1	16.73%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.239e-01	1.0000	3.0	6.12%	2720.7	6.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-5.181e-01	1.0000	6.0	12.24%	5539.4	12.62%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.131e-01	1.0000	19.0	38.78%	17373.7	39.57%
DLX5(Homeobox)/BasalGanglia-Dlx5-ChIP-seq(GSE124936)/Homer	SSTAATTA	1e0	-5.126e-01	1.0000	14.0	28.57%	12871.3	29.32%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-5.096e-01	1.0000	28.0	57.14%	25410.0	57.87%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-5.094e-01	1.0000	9.0	18.37%	8333.8	18.98%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.064e-01	1.0000	4.0	8.16%	3708.5	8.45%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.051e-01	1.0000	30.0	61.22%	27199.4	61.95%
ZNF341(Zf)/EBV-ZNF341-ChIP-Seq(GSE113194)/Homer	GGAACAGCCG	1e0	-5.029e-01	1.0000	9.0	18.37%	8358.5	19.04%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-4.992e-01	1.0000	22.0	44.90%	20127.0	45.84%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.881e-01	1.0000	11.0	22.45%	10250.5	23.35%
Tbx6(T-box)/ESC-Tbx6-ChIP-Seq(GSE93524)/Homer	DAGGTGTBAA	1e0	-4.841e-01	1.0000	14.0	28.57%	13000.7	29.61%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-4.809e-01	1.0000	6.0	12.24%	5663.7	12.90%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-4.779e-01	1.0000	14.0	28.57%	13029.3	29.68%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.733e-01	1.0000	11.0	22.45%	10314.5	23.49%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.647e-01	1.0000	3.0	6.12%	2866.3	6.53%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-4.615e-01	1.0000	8.0	16.33%	7598.3	17.31%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.579e-01	1.0000	2.0	4.08%	1902.0	4.33%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.568e-01	1.0000	4.0	8.16%	3851.6	8.77%
Npas4(bHLH)/Neuron-Npas4-ChIP-Seq(GSE127793)/Homer	NHRTCACGACDN	1e0	-4.529e-01	1.0000	11.0	22.45%	10405.9	23.70%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.528e-01	1.0000	5.0	10.20%	4817.2	10.97%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-4.522e-01	1.0000	4.0	8.16%	3865.7	8.80%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.430e-01	1.0000	8.0	16.33%	7673.1	17.48%
TRPS1(Zf)/MCF7-TRPS1-ChIP-Seq(GSE107013)/Homer	AGATAAGANN	1e0	-4.392e-01	1.0000	24.0	48.98%	22219.4	50.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-4.365e-01	1.0000	7.0	14.29%	6764.1	15.41%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-4.286e-01	1.0000	13.0	26.53%	12355.6	28.14%
Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer	TTTTATGGCM	1e0	-4.275e-01	1.0000	29.0	59.18%	26708.2	60.83%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.218e-01	1.0000	1.0	2.04%	945.0	2.15%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-4.151e-01	1.0000	7.0	14.29%	6851.3	15.60%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.100e-01	1.0000	1.0	2.04%	965.3	2.20%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.095e-01	1.0000	2.0	4.08%	2014.8	4.59%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.087e-01	1.0000	35.0	71.43%	32040.2	72.98%
bHLHE41(bHLH)/proB-Bhlhe41-ChIP-Seq(GSE93764)/Homer	KCACGTGMCN	1e0	-4.003e-01	1.0000	15.0	30.61%	14331.3	32.64%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.983e-01	1.0000	5.0	10.20%	5011.4	11.41%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.879e-01	1.0000	23.0	46.94%	21618.3	49.24%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-3.868e-01	1.0000	19.0	38.78%	18036.1	41.08%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.807e-01	1.0000	1.0	2.04%	1018.4	2.32%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.682e-01	1.0000	4.0	8.16%	4147.1	9.45%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.674e-01	1.0000	5.0	10.20%	5133.0	11.69%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.672e-01	1.0000	2.0	4.08%	2124.7	4.84%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.639e-01	1.0000	5.0	10.20%	5146.9	11.72%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.570e-01	1.0000	4.0	8.16%	4189.6	9.54%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.547e-01	1.0000	4.0	8.16%	4198.7	9.56%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.544e-01	1.0000	1.0	2.04%	1070.3	2.44%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-3.519e-01	1.0000	39.0	79.59%	35732.2	81.38%
Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer	YSTGGGTGGTCT	1e0	-3.503e-01	1.0000	3.0	6.12%	3208.9	7.31%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-3.469e-01	1.0000	7.0	14.29%	7157.4	16.30%
CREB5(bZIP)/LNCaP-CREB5.V5-ChIP-Seq(GSE137775)/Homer	VVATGACGTCAT	1e0	-3.444e-01	1.0000	5.0	10.20%	5228.6	11.91%
RORg(NR)/Liver-Rorc-ChIP-Seq(GSE101115)/Homer	WAABTAGGTCAV	1e0	-3.296e-01	1.0000	1.0	2.04%	1123.6	2.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.292e-01	1.0000	1.0	2.04%	1124.6	2.56%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-3.272e-01	1.0000	3.0	6.12%	3290.3	7.49%
LHX9(Homeobox)/Hct116-LHX9.V5-ChIP-Seq(GSE116822)/Homer	NGCTAATTAG	1e0	-3.239e-01	1.0000	20.0	40.82%	19332.1	44.03%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-3.199e-01	1.0000	13.0	26.53%	12962.8	29.52%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.174e-01	1.0000	1.0	2.04%	1151.9	2.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-3.095e-01	1.0000	7.0	14.29%	7347.8	16.74%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-3.084e-01	1.0000	18.0	36.73%	17628.1	40.15%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-3.063e-01	1.0000	19.0	38.78%	18550.2	42.25%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.061e-01	1.0000	3.0	6.12%	3370.9	7.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.037e-01	1.0000	10.0	20.41%	10252.3	23.35%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.011e-01	1.0000	2.0	4.08%	2325.2	5.30%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.009e-01	1.0000	19.0	38.78%	18588.4	42.34%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.937e-01	1.0000	1.0	2.04%	1210.0	2.76%
RAR:RXR(NR),DR0/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.871e-01	1.0000	1.0	2.04%	1226.2	2.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.853e-01	1.0000	4.0	8.16%	4491.3	10.23%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.828e-01	1.0000	22.0	44.90%	21420.7	48.79%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.769e-01	1.0000	4.0	8.16%	4531.3	10.32%
MNT(bHLH)/HepG2-MNT-ChIP-Seq(Encode)/Homer	DGCACACGTG	1e0	-2.756e-01	1.0000	10.0	20.41%	10431.1	23.76%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.662e-01	1.0000	1.0	2.04%	1283.0	2.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.638e-01	1.0000	2.0	4.08%	2459.8	5.60%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.539e-01	1.0000	2.0	4.08%	2498.0	5.69%
Hnf6b(Homeobox)/LNCaP-Hnf6b-ChIP-Seq(GSE106305)/Homer	TATTGAYY	1e0	-2.502e-01	1.0000	11.0	22.45%	11559.4	26.33%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-2.350e-01	1.0000	4.0	8.16%	4748.7	10.82%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.321e-01	1.0000	1.0	2.04%	1388.0	3.16%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.316e-01	1.0000	3.0	6.12%	3702.1	8.43%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.265e-01	1.0000	3.0	6.12%	3728.7	8.49%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-2.216e-01	1.0000	2.0	4.08%	2636.2	6.00%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.145e-01	1.0000	7.0	14.29%	7938.7	18.08%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-2.108e-01	1.0000	3.0	6.12%	3813.7	8.69%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.046e-01	1.0000	1.0	2.04%	1486.8	3.39%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.021e-01	1.0000	12.0	24.49%	12899.3	29.38%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.965e-01	1.0000	3.0	6.12%	3895.1	8.87%
PBX2(Homeobox)/K562-PBX2-ChIP-Seq(Encode)/Homer	RTGATTKATRGN	1e0	-1.919e-01	1.0000	10.0	20.41%	11071.0	25.22%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.907e-01	1.0000	4.0	8.16%	5020.8	11.44%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.892e-01	1.0000	8.0	16.33%	9133.9	20.80%
Sp2(Zf)/HEK293-Sp2.eGFP-ChIP-Seq(Encode)/Homer	YGGCCCCGCCCC	1e0	-1.850e-01	1.0000	24.0	48.98%	24049.7	54.78%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.799e-01	1.0000	6.0	12.24%	7194.0	16.39%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.794e-01	1.0000	1.0	2.04%	1589.5	3.62%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.784e-01	1.0000	7.0	14.29%	8224.7	18.73%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.784e-01	1.0000	5.0	10.20%	6168.1	14.05%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.725e-01	1.0000	1.0	2.04%	1620.9	3.69%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.663e-01	1.0000	1.0	2.04%	1649.4	3.76%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.631e-01	1.0000	2.0	4.08%	2946.7	6.71%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.594e-01	1.0000	6.0	12.24%	7369.7	16.79%
Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer	HDGYAATGAAAN	1e0	-1.539e-01	1.0000	21.0	42.86%	21720.4	49.47%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.522e-01	1.0000	7.0	14.29%	8465.2	19.28%
Elf4(ETS)/BMDM-Elf4-ChIP-Seq(GSE88699)/Homer	ACTTCCKGKT	1e0	-1.499e-01	1.0000	13.0	26.53%	14381.7	32.76%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.425e-01	1.0000	10.0	20.41%	11568.4	26.35%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.403e-01	1.0000	3.0	6.12%	4285.2	9.76%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.388e-01	1.0000	1.0	2.04%	1793.6	4.09%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.373e-01	1.0000	5.0	10.20%	6524.7	14.86%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.366e-01	1.0000	2.0	4.08%	3125.8	7.12%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.296e-01	1.0000	20.0	40.82%	21128.3	48.12%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.286e-01	1.0000	8.0	16.33%	9736.1	22.17%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.268e-01	1.0000	10.0	20.41%	11757.5	26.78%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.267e-01	1.0000	4.0	8.16%	5537.4	12.61%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.261e-01	1.0000	17.0	34.69%	18434.4	41.99%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.259e-01	1.0000	14.0	28.57%	15632.6	35.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.170e-01	1.0000	6.0	12.24%	7807.0	17.78%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.154e-01	1.0000	3.0	6.12%	4508.1	10.27%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.106e-01	1.0000	4.0	8.16%	5705.3	12.99%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.097e-01	1.0000	2.0	4.08%	3344.9	7.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.068e-01	1.0000	5.0	10.20%	6857.7	15.62%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.029e-01	1.0000	3.0	6.12%	4637.4	10.56%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-9.709e-02	1.0000	1.0	2.04%	2082.6	4.74%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer	NNAYTTCCTGHN	1e0	-9.551e-02	1.0000	11.0	22.45%	13191.5	30.05%
Zac1(Zf)/Neuro2A-Plagl1-ChIP-Seq(GSE75942)/Homer	HAWGRGGCCM	1e0	-8.633e-02	1.0000	26.0	53.06%	27104.4	61.73%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.734e-02	1.0000	10.0	20.41%	12520.0	28.52%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.598e-02	1.0000	7.0	14.29%	9461.4	21.55%
En1(Homeobox)/SUM149-EN1-ChIP-Seq(GSE120957)/Homer	NDCTAATTAS	1e0	-7.479e-02	1.0000	22.0	44.90%	23836.8	54.29%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-7.120e-02	1.0000	15.0	30.61%	17509.2	39.88%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.953e-02	1.0000	6.0	12.24%	8508.6	19.38%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-6.090e-02	1.0000	3.0	6.12%	5216.0	11.88%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-5.672e-02	1.0000	12.0	24.49%	14964.8	34.08%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.613e-02	1.0000	2.0	4.08%	4005.9	9.12%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.232e-02	1.0000	6.0	12.24%	8874.5	20.21%
ETV4(ETS)/HepG2-ETV4-ChIP-Seq(ENCODE)/Homer	ACCGGAAGTG	1e0	-5.148e-02	1.0000	14.0	28.57%	17048.7	38.83%
KLF1(Zf)/HUDEP2-KLF1-CutnRun(GSE136251)/Homer	VDGGGYGGGGCY	1e0	-5.074e-02	1.0000	15.0	30.61%	18023.2	41.05%
PRDM10(Zf)/HEK293-PRDM10.eGFP-ChIP-Seq(Encode)/Homer	TGGTACATTCCA	1e0	-4.598e-02	1.0000	4.0	8.16%	6743.4	15.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.585e-02	1.0000	2.0	4.08%	4201.8	9.57%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-4.312e-02	1.0000	1.0	2.04%	2747.8	6.26%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.101e-02	1.0000	7.0	14.29%	10277.7	23.41%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-3.567e-02	1.0000	8.0	16.33%	11529.9	26.26%
ZNF7(Zf)/HepG2-ZNF7.Flag-ChIP-Seq(Encode)/Homer	CTGCCWVCTTTTRTA	1e0	-3.396e-02	1.0000	4.0	8.16%	7084.5	16.14%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-3.235e-02	1.0000	4.0	8.16%	7138.2	16.26%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.197e-02	1.0000	1.0	2.04%	2993.6	6.82%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.050e-02	1.0000	2.0	4.08%	4591.5	10.46%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.969e-02	1.0000	3.0	6.12%	5975.3	13.61%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.961e-02	1.0000	1.0	2.04%	3056.9	6.96%
PRDM15(Zf)/ESC-Prdm15-ChIP-Seq(GSE73694)/Homer	YCCDNTCCAGGTTTT	1e0	-2.261e-02	1.0000	10.0	20.41%	14206.4	32.36%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-2.132e-02	1.0000	7.0	14.29%	11084.0	25.25%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.115e-02	1.0000	3.0	6.12%	6322.8	14.40%
SCRT1(Zf)/HEK293-SCRT1.eGFP-ChIP-Seq(Encode)/Homer	GCAACAGGTG	1e0	-1.938e-02	1.0000	1.0	2.04%	3404.3	7.75%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.775e-02	1.0000	11.0	22.45%	15533.3	35.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.544e-02	1.0000	9.0	18.37%	13633.5	31.05%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-8.073e-03	1.0000	5.0	10.20%	9849.9	22.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.271e-03	1.0000	13.0	26.53%	18766.6	42.74%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-5.205e-03	1.0000	3.0	6.12%	7684.7	17.50%
Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer	RGCAATNAAA	1e0	-2.743e-03	1.0000	23.0	46.94%	28666.5	65.29%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.527e-03	1.0000	5.0	10.20%	11486.4	26.16%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	0.0	0.00%	1153.5	2.63%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	0.0	0.00%	145.8	0.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	0.0	0.00%	923.9	2.10%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-0.000e+00	1.0000	0.0	0.00%	1616.0	3.68%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	0.000e+00	1.0000	0.0	0.00%	204.1	0.46%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	509.1	1.16%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	0.000e+00	1.0000	0.0	0.00%	1235.3	2.81%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	2043.3	4.65%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	129.5	0.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	273.6	0.62%
DUX(Homeobox)/C2C12-Dux-ChIP-Seq(GSE87279)/Homer	BCWGATTCAATCAAN	1e0	0.000e+00	1.0000	0.0	0.00%	44.6	0.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	0.000e+00	1.0000	0.0	0.00%	4574.4	10.42%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	0.000e+00	1.0000	0.0	0.00%	1135.6	2.59%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	763.6	1.74%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	363.0	0.83%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	0.000e+00	1.0000	0.0	0.00%	4417.7	10.06%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	0.000e+00	1.0000	0.0	0.00%	978.5	2.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	1846.4	4.21%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	0.0	0.00%	1500.2	3.42%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	19.0	0.04%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	0.000e+00	1.0000	0.0	0.00%	887.0	2.02%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	108.5	0.25%
ZKSCAN1(Zf)/HepG2-ZKSCAN1-ChIP-Seq(Encode)/Homer	GCACAYAGTAGGKCY	1e0	0.000e+00	1.0000	0.0	0.00%	385.9	0.88%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	0.000e+00	1.0000	0.0	0.00%	533.1	1.21%
ZNF768(Zf)/Rajj-ZNF768-ChIP-Seq(GSE111879)/Homer	RHHCAGAGAGGB	1e0	0.000e+00	1.0000	0.0	0.00%	439.6	1.00%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	460.6	1.05%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	826.4	1.88%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	826.4	1.88%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	0.0	0.00%	483.7	1.10%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	0.000e+00	1.0000	0.0	0.00%	892.6	2.03%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	188.2	0.43%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	0.000e+00	1.0000	0.0	0.00%	876.3	2.00%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	0.0	0.00%	2096.2	4.77%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	0.000e+00	1.0000	0.0	0.00%	1120.5	2.55%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	0.0	0.00%	1807.1	4.12%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	0.0	0.00%	1367.4	3.11%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	170.8	0.39%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	0.000e+00	1.0000	0.0	0.00%	1163.3	2.65%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	0.000e+00	1.0000	0.0	0.00%	1567.3	3.57%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	42.9	0.10%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	1315.5	3.00%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	0.000e+00	1.0000	0.0	0.00%	2472.7	5.63%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	0.000e+00	1.0000	0.0	0.00%	2067.7	4.71%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	177.7	0.40%