Information for 2-GCTGGTGCAA (Motif 2)

A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
Reverse Opposite:
A C G T A G C T A C T G A G T C C G T A A G T C G T A C G T C A A C T G A G T C
p-value:1e-7
log p-value:-1.647e+01
Information Content per bp:1.857
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif18.37%
Number of Background Sequences with motif688.8
Percentage of Background Sequences with motif1.57%
Average Position of motif in Targets606.2 +/- 207.9bp
Average Position of motif in Background520.0 +/- 347.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ASCL1(var.2)/MA1631.1/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGTGCAA
NNGGCAGGTGCNN
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G G A C T T A C G A T G C G C A T T A C G

TCF4/MA0830.2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GCTGGTGCAA
NNGGCAGGTGCNN
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
T A C G T A C G C T A G T A C G A T G C T C G A A T C G T A C G A G C T A T C G A T G C G T A C T A C G

TCF3/MA0522.3/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGCAA
NNGCAGGTGNN-
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
T A C G A T C G T C A G A G T C T C G A A T C G T A C G A G C T T A C G A T G C A T C G A C G T

TCF12(var.2)/MA1648.1/Jaspar

Match Rank:4
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGCAA
NNGCAGGTGNN-
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
T A G C T C A G T C A G A G T C T C G A A T C G T A C G A G C T T C A G A T G C A T C G A C G T

Snail1(Zf)/LS174T-SNAIL1.HA-ChIP-Seq(GSE127183)/Homer

Match Rank:5
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGTGCAA
RGCAGGTGYA-
 A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
T C G A T C A G T A G C C G T A T A C G T A C G A G C T C A T G A G C T T C G A A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCTGGTGCAA
SDGCAGGTGCNS
 A C G T A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

SNAI1/MA1558.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCTGGTGCAA
GGCAGGTGCA-
 A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
C T A G C T A G G T A C G C T A T C A G C T A G C A G T C T A G A G T C C T G A A C G T

SNAI3/MA1559.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCTGGTGCAA
AACAGGTGCA-
 A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
C T G A C T G A G A T C C T G A C T A G A T C G A C G T C T A G A G T C T C G A A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTGGTGCAA
NATGTTGCAA
 A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

CEBPD/MA0836.2/Jaspar

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCTGGTGCAA--
NNATTGTGCAATN
 A C G T A C T G A G T C A C G T A C T G A C T G C G A T A C T G G T A C T C G A T G C A A C G T A C G T
C G T A C G A T T C G A G A C T C A G T C T A G G A C T C T A G G T A C G T C A C T G A A G C T G T C A